Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04074 ATGGCTGCAGCTAAGAACAGTGGAAAATTCAATAAAGATTTTGGTGATGAAACTCACAACAATCACAACAAGGTTATACAAATAGGTGAAAGCCAAGTTAATTGGGAGATTGAAAAAGGTAAAAATGCTGAATTAAGCTCTTCTCAAAAGTATCATTGGAAGCCCGTTTTTGATGAAGCTTCTATTTCACATAATAGACCTTTCAAGAAAAGTAAAAGCCCTGAACGTGAAAATCAAAATCATAATCAAAATCAATTTTCACCTTTCTCTGTTCCTTCTTCAGCTTCTTCATCTTCTTCATGTTCATCTTCAAGACTTGTTTTTCCTTTTGCTTTTGATAATACTTCACAACAATTTGGTACCAACAACAATTTACCCTTTTACCCTTATCCACCACCTACACAAAACCAAAACCAAAACCAACAGCAACAACAACAAATGATATCTTTTGGGTCACAATCACAACAACAACAAAACAATGTTGTTTCATATCCACAAATTTTGTCTCAACAACAACAGCAGCAACATCATCAACAGCTACTTCAATATTGGAGTGATGCATTGAATCTAAGTCCAAGAGGAAGAATGTTAATGATGATGAACAACAATAATAATAGGTATTTGGGGCAATATGGTAATAATAATGGACCAATGTTTAGGCCTCAAGTTCAACCTATAAGTACTACAAAACTCTATAGAGGAGTTAGACAAAGACATTGGGGAAAATGGGTTGCTGAAATTCGTCTACCTCGAAATAGAACTCGTCTTTGGTTAGGCACATTTGATACCGCCGAAGATGCTGCTTTAGCCTATGATCGCGAGGCGTTCAAGTTAAGAGGAGAAAATGCAAGACTCAATTTTCCCGAACTTTTTCTCAACAAAGATAAAGATAAAGATAAAGATAAAGAAAAATCACCATCTCCATCACCACCTCCAACAACAACAGATTCGTCTGTTACTTCTCCGTCAAGTAACACCGTGACAAAGCAGCCGGAGCCTCCACCGATGCAGACCCTTCCAATAGAAGAGTCTAATGAGAATGACTCCGGAATTGGATCGTGTGATGCTACGGTGAGTGATGGTTTAGAAGGAGTTTCACAGTCACAAGAATTGGTTTGGAGTGAAATGTCAGCATGGTTTAATGCTATTCCAGCTGCTTGGGGTCCAGGAAGTCCTGTTTGGGATGATAATCTTTTTCCACAATCACAAACTCCTTTTTCCAATCTCAACCAACATGAAGAATTCAATGATTTTGATCCTCAGATAGGGTCAGGTTCTTCTTCCATTAGACCTTTCTTTTGGAATCATGATCAAACTTAA 1320 0.375 MAAAKNSGKFNKDFGDETHNNHNKVIQIGESQVNWEIEKGKNAELSSSQKYHWKPVFDEASISHNRPFKKSKSPERENQNHNQNQFSPFSVPSSASSSSSCSSSRLVFPFAFDNTSQQFGTNNNLPFYPYPPPTQNQNQNQQQQQQMISFGSQSQQQQNNVVSYPQILSQQQQQQHHQQLLQYWSDALNLSPRGRMLMMMNNNNNRYLGQYGNNNGPMFRPQVQPISTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAALAYDREAFKLRGENARLNFPELFLNKDKDKDKDKEKSPSPSPPPTTTDSSVTSPSSNTVTKQPEPPPMQTLPIEESNENDSGIGSCDATVSDGLEGVSQSQELVWSEMSAWFNAIPAAWGPGSPVWDDNLFPQSQTPFSNLNQHEEFNDFDPQIGSGSSSIRPFFWNHDQT 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04074 439 MobiDBLite consensus disorder prediction 290 306 - -
Trre11g04074 439 CDD AP2 230 290 IPR001471 GO:0003700|GO:0006355
Trre11g04074 439 Pfam AP2 domain 232 280 IPR001471 GO:0003700|GO:0006355
Trre11g04074 439 MobiDBLite consensus disorder prediction 1 27 - -
Trre11g04074 439 MobiDBLite consensus disorder prediction 134 156 - -
Trre11g04074 439 MobiDBLite consensus disorder prediction 78 94 - -
Trre11g04074 439 MobiDBLite consensus disorder prediction 122 156 - -
Trre11g04074 439 MobiDBLite consensus disorder prediction 316 332 - -
Trre11g04074 439 SUPERFAMILY DNA-binding domain 231 289 IPR016177 GO:0003677
Trre11g04074 439 ProSiteProfiles AP2/ERF domain profile. 231 288 IPR001471 GO:0003700|GO:0006355
Trre11g04074 439 SMART rav1_2 231 294 IPR001471 GO:0003700|GO:0006355
Trre11g04074 439 Gene3D AP2/ERF domain 231 289 IPR036955 GO:0003700|GO:0006355
Trre11g04074 439 MobiDBLite consensus disorder prediction 62 77 - -
Trre11g04074 439 MobiDBLite consensus disorder prediction 62 94 - -
Trre11g04074 439 MobiDBLite consensus disorder prediction 340 360 - -
Trre11g04074 439 FunFam Ethylene-responsive transcription factor 2 230 289 - -
Trre11g04074 439 PRINTS Ethylene responsive element binding protein signature 254 270 IPR001471 GO:0003700|GO:0006355
Trre11g04074 439 PRINTS Ethylene responsive element binding protein signature 232 243 IPR001471 GO:0003700|GO:0006355
Trre11g04074 439 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 30 396 - -
Trre11g04074 439 MobiDBLite consensus disorder prediction 290 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04074 Trre-Chr11 53754683 53756002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04074 1 402 AP2-EREBP Transcription Factor Family AT2G20880 40.194 5.70e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre11g04074 AP2 3.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04074 - - psat:127086869 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04074 11 53754683 53756002 Trre11g04074 11 53754683 53756002 ECH