Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04068 ATGGGGTGCTGTTTATCGACGAGCAATAGAAGTACTGATGACGCGGGGTCTTCATCTTGTTTAGAAATCGGATTGTGTGGTCAAAAGAAAGCGAGGAGAATGTTCTCTGATCATGTTGTCTCTTTGCAAAAGTTAACATCCTTGCCAAACAGAATATTCAGTAACGGGAAGAGTCGGTCTTCTTGTATATTTACGCAGCAGGGTCGAAAGGGTGTTAATCAGGATGCTATGATTGTATGGGAAGATTTCACATCAGAAGATGCGATCTTTTGTGGCGTATTTGATGGTCATGGTCCGTATGGTCACCTTGTCGCACGTAAAGTTAGGGATAACTTACCGATAAAATTGCTTTCATTTTTGGATTCATCTGAGTCGAGACGAAGTAAAGCTAGTTTCAAAAAGGAAATAAAGCCTGAAAGTGGGGAGGCGGAGAAGGATTTCTCTGCCGAGGAGGACGTGAGTACGATGTGGAGAGAAGCTTTCATGAAGGCATACAAGGCTATGGATAAAGAGCTGAAGTCTCATGCAAATTTGGACTGTTTCTGCAGTGGAAGCACATCTGTGACTGTAGTGAAACAGGGTTCAAATTTGTTCATGGGAAATATTGGTGATTCAAGAGCAATCATGGGATCTAAGGATAGAAATGACTCGATGGTGGCGATTCAGCTGACTGTTGATTTGAAACCTGATTTGCCAAGAGAAGCAGAGAGAATTAAGAAGTGTAAGGGTAGGGTATTTGCATTGGAAGATGAACCAGAAGTTCCTAGGGTGTGGTTACCTTTTGATGATGCACCTGGATTAGCAATGGCTAGAGCATTTGGAGATTTTTGCTTGAAGGAGTATGGTGTGATTTCTATACCTGAATTTACGCACCGGCTTCTTACAGACAAAGACCAGTTCATTGTTCTTGCCTCGGACGGGGTCTGGGATGTTTTGAGCAATGAAGAGGTGGTGCAGATAGTATCATCAGCACCGAATCGATCATCAGCAGCCAGGGTTATAGTGGAATCTGCCGCACGAGAGTGGAAACTTAAATATCCGACTTCAAAAATGGACGACTGTGCCGTTGTGTGCCTATTTTTGGACGGAAAAATGAACTCGGAAGAATCTGATTGTGATGAACATTGCTATTCTTCCGCAACCATCCAGAGCAACAACGATTTAGGTAATCCAGTTGAGTCAGACGAAGGTCAAAAGTCCGAACCATCTTTGCGAAGGAACTTCACTGTGAGATCCTCCAAAGAAATTCAGAGATCTGCTGAAGAATCTGCTGATGTTGAAGATGGAACATCAACAGCTGAAGATCAAAACTGGTTAGGTCTAGAAGGTGTCACCCGAGTAAACTCACTGGTACAACTTCCTAGATTTTCTGAAGAAAAGCCTAACTCTTGA 1392 0.4303 MGCCLSTSNRSTDDAGSSSCLEIGLCGQKKARRMFSDHVVSLQKLTSLPNRIFSNGKSRSSCIFTQQGRKGVNQDAMIVWEDFTSEDAIFCGVFDGHGPYGHLVARKVRDNLPIKLLSFLDSSESRRSKASFKKEIKPESGEAEKDFSAEEDVSTMWREAFMKAYKAMDKELKSHANLDCFCSGSTSVTVVKQGSNLFMGNIGDSRAIMGSKDRNDSMVAIQLTVDLKPDLPREAERIKKCKGRVFALEDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFTHRLLTDKDQFIVLASDGVWDVLSNEEVVQIVSSAPNRSSAARVIVESAAREWKLKYPTSKMDDCAVVCLFLDGKMNSEESDCDEHCYSSATIQSNNDLGNPVESDEGQKSEPSLRRNFTVRSSKEIQRSAEESADVEDGTSTAEDQNWLGLEGVTRVNSLVQLPRFSEEKPNS 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04068 463 Gene3D - 50 363 IPR036457 -
Trre11g04068 463 MobiDBLite consensus disorder prediction 411 425 - -
Trre11g04068 463 SUPERFAMILY PP2C-like 49 363 IPR036457 -
Trre11g04068 463 PANTHER PROTEIN PHOSPHATASE 59 359 IPR015655 GO:0004722|GO:0006470
Trre11g04068 463 CDD PP2Cc 59 361 IPR001932 -
Trre11g04068 463 Pfam Protein phosphatase 2C 95 338 IPR001932 -
Trre11g04068 463 ProSiteProfiles PPM-type phosphatase domain profile. 60 361 IPR001932 -
Trre11g04068 463 MobiDBLite consensus disorder prediction 383 410 - -
Trre11g04068 463 FunFam probable protein phosphatase 2C 52 51 364 - -
Trre11g04068 463 MobiDBLite consensus disorder prediction 383 439 - -
Trre11g04068 463 SMART PP2C_4 49 359 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04068 Trre-Chr11 53683538 53685441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04068 1 463 PP2C-type Phosphatase Gene Family AT1G03590 67.447 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04068 - - gmx:100788149 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04068 11 53683538 53685441 Trre11g04068 11 53683538 53685441 ECH
Trre11g04068 11 53683538 53685441 Trre7g01204 7 8517211 8520145 PCT