Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04058 ATGTTGATTCCACCACCACCTACAAATCAATCTCTGAATGAGAACTGCAGAAGGTGTGCATGCTGGATTCAAGGGAGCTCAATAAAATCAAGAGGATTAAAGAAGCATTTGAAGAGGCTCAAAGCTCCCAAGCATCGGATGCTTGACAAATTGGGTGGTGCTTTTGTGGAGGCTATATTAGACAAGGATAATTTCACTTTAGACGAGCTTCTACATGAAGAGGAAGTAATCCAAGAATGCAAGTTCATGACACACATTGGGATGAAGTATTGTCACTTCACTCCTCCCTTCAGATTTCAATTAACAAAGAATACTGTCGAATCTGAATATTCGGCTAAACTCGGTATTTTGGTTAAAGAAGAGATCAAACAATGTTATGAACTCATAAACAGATTAGCTAGGGAGAGGAGTTGTATATCTAGTGAAAAGATTCTTTATAAGTTATTCTTTTTTTTTTCTGCTGAAGTTTCTCCGCAGATAGCAAATCTTTTGGACTGTGCTACATGGTCAGGGGCTGGACCAAGACTAATGGACACTGTTACTCAAGGCGTTTTGCTAGCAAGGAAACCGGTTGGTGGAATCAAGATAGGAAAAGAAGCCGGAGAATGGACAGCATCCAACTTTCATCCATACTTACCATCAGAAAATTACCTTACCTTGCAGGTGATCCACCACCCTTGCTTTATGGTTTCGGTTTCACATGTTTTTTCGTCAAACCTGACCCAACCCGTACCCATGGTCATATCGTTATTACATTCAAATTGGAGATTCAAAATAAATTTGACTGCTTACGCTGTGTTTAAATTCAGGTTTTTATTTGCAAGGAAGCACCGGCTGGTCGATGTTGTAGTGGGGAACAATTCATTTGATAAAACTGTTGTTGTTGCTGCTCTTCCTGGTAGGGTTGGTACTCTAGATGAGGTGTTCGAGATGCTGGCATTAATTCAGCTAGAACGGATCGGATCAAAGCTTCCTATTCCCTTCATGTTGTCGAACAACGATTCGTTTTATTCAAAACTGCTAGACTTTTTAGATGATTGTGAGAATTGGGGAACTGTCTCTAAAGGAGAGTTTGCATCATTATGGAAGCTGACCTTGAAGTCATCAGTTTGTTGCGTGGAATTAGTAACCATTAAGGATGATAAAATTGCCGGCAAACTTGATTCATAG 1170 0.4 MLIPPPPTNQSLNENCRRCACWIQGSSIKSRGLKKHLKRLKAPKHRMLDKLGGAFVEAILDKDNFTLDELLHEEEVIQECKFMTHIGMKYCHFTPPFRFQLTKNTVESEYSAKLGILVKEEIKQCYELINRLARERSCISSEKILYKLFFFFSAEVSPQIANLLDCATWSGAGPRLMDTVTQGVLLARKPVGGIKIGKEAGEWTASNFHPYLPSENYLTLQVIHHPCFMVSVSHVFSSNLTQPVPMVISLLHSNWRFKINLTAYAVFKFRFLFARKHRLVDVVVGNNSFDKTVVVAALPGRVGTLDEVFEMLALIQLERIGSKLPIPFMLSNNDSFYSKLLDFLDDCENWGTVSKGEFASLWKLTLKSSVCCVELVTIKDDKIAGKLDS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04058 389 Pfam Possible lysine decarboxylase 177 364 IPR031100 -
Trre11g04058 389 PANTHER EXPRESSED PROTEIN 109 231 - -
Trre11g04058 389 Gene3D - 29 62 IPR036986 GO:0003723
Trre11g04058 389 Pfam RS4NT (NUC023) domain 31 56 IPR013843 -
Trre11g04058 389 Gene3D - 116 369 - -
Trre11g04058 389 SUPERFAMILY MCP/YpsA-like 164 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04058 Trre-Chr11 53612313 53615913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04058 30 56 Cytoplasmic Ribosomal Protein Gene Family AT2G17360 85.185 1.14e-07 49.7