Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04053 ATGGAAATCAATGGCAATGTGAAGCTCAAAACTCAGCTATGCAGAAAATTCATGATGCAAGGAACTTGTAATCTTGGAACCAAATGCAACTATGCACATGGCTACTCTGAACTCAGAGAATCACCAAAACTCTGCAGAATGTTCTCATCCAACAGACAATGCAGCTTTGGAAACAACTGTCGTTTCCTCCATTCAGCTCCTCATCATGAGTCTGCTGCAATCAACCTGACTCCACAACCACAACAAGGGACAGTGCAGAATGCAGGATGGAGGACCATGGAAACTGCTGCAATTAACGATGGTTCGTCTTCTGAACAAAACAAGAGGCTTAAAACTTCTACTGATCATGCTACAAATGACCCAGCCAGCGGTAGCACGGTGGCCACAACCAAGTTGCATGTAAGGGGACCCTATGCTGGTAAAAGTAGGTTCGACAAAGAGGCCATGAAAGGGGTCATTGGCAAATATGGTGATTGGCTTTAA 483 0.4472 MEINGNVKLKTQLCRKFMMQGTCNLGTKCNYAHGYSELRESPKLCRMFSSNRQCSFGNNCRFLHSAPHHESAAINLTPQPQQGTVQNAGWRTMETAAINDGSSSEQNKRLKTSTDHATNDPASGSTVATTKLHVRGPYAGKSRFDKEAMKGVIGKYGDWL 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04053 160 ProSiteProfiles Zinc finger C3H1-type profile. 39 67 IPR000571 GO:0046872
Trre11g04053 160 FunFam zinc finger CCCH domain-containing protein 15-like 3 41 - -
Trre11g04053 160 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 10 34 IPR000571 GO:0046872
Trre11g04053 160 SUPERFAMILY CCCH zinc finger 7 39 IPR036855 GO:0046872
Trre11g04053 160 MobiDBLite consensus disorder prediction 97 128 - -
Trre11g04053 160 SUPERFAMILY CCCH zinc finger 42 67 IPR036855 GO:0046872
Trre11g04053 160 ProSiteProfiles Zinc finger C3H1-type profile. 8 36 IPR000571 GO:0046872
Trre11g04053 160 SMART c3hfinal6 8 35 IPR000571 GO:0046872
Trre11g04053 160 SMART c3hfinal6 39 66 IPR000571 GO:0046872
Trre11g04053 160 PANTHER CCCH ZINC FINGER/TIS11-RELATED 9 102 IPR045877 GO:0003729
Trre11g04053 160 Pfam CCCH-type zinc finger 43 64 IPR041367 -
Trre11g04053 160 Gene3D - 4 41 - -
Trre11g04053 160 Gene3D - 42 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04053 Trre-Chr11 53593209 53595236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04053 10 70 C3H Transcription Factor Family AT1G68200 38.235 2.19e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre11g04053 zf-CCCH 1.8e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04053 - K15308 cam:101493245 143.28