Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04050 ATGGCTGTCTCAGGTTCTTCTGGTTCTGGGCAGCCACAATTCATTTCAAGCACTGGAAACCAAAACTCCTCCAATGCGCCGCTCATTGACAGTGACACCACAAATACTGATCAAATTGTTGTCCCTGATAGGACAAGCTGGAAAAACTTATTTGCATATATGGGGCCTGGATTTCTTGTTTCCATTGCATATATAGACCCAGGAAACTTTGAGACGGATCTACAATCTGGGGCACAATATAGATATGAGTTACTTTGGATCATATTGGTGGCATCTTGTGTTGCTCTTGTAATTCAATCGATGGCAGCCAATCTTGGGGTGGTTACGGGAAAGCACTTAGCAGAGCATTGTAGAGCTGAATATTCGCGGGTGTCCAACTTTATTCTTTGGATTATTGCTGAAATTGCCATAGTGGCCTGTGACATCCCAGAAGTGATCGGGACAGCCTTTGCGTTAAATATGCTCTTCAACATACCTGTTTGGATTGGTGTGCTACTGACCGGACTCAGCACATTGATGCTCTTAGCATTACAACAATATGGGGTTAGGAAACTTGAATTCTTGATTGCATTTCTTGTGTTTACTATTGCTGCGTGTTTTTGGGCTGAGCTTGGATATGCAAAGCCTGATGCTAAAGAAGTTGTGAAGGGTCTTTTTGTGCCACAACTTAAAGGGAGTGGTGCTACTGGCCTTGCAATTTCACTCCTCGGTGCTATGGTTATGCCGCACAATCTCTTCCTGCACTCGGCACTGGTACTCTCTAGGAAAATACCATGA 777 0.4402 MAVSGSSGSGQPQFISSTGNQNSSNAPLIDSDTTNTDQIVVPDRTSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYRYELLWIILVASCVALVIQSMAANLGVVTGKHLAEHCRAEYSRVSNFILWIIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLMLLALQQYGVRKLEFLIAFLVFTIAACFWAELGYAKPDAKEVVKGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIP 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04050 258 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 49 257 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre11g04050 258 NCBIfam Nramp family divalent metal transporter 55 258 - -
Trre11g04050 258 MobiDBLite consensus disorder prediction 1 33 - -
Trre11g04050 258 Pfam Natural resistance-associated macrophage protein 70 256 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre11g04050 258 PRINTS Natural resistance-associated macrophage protein signature 182 203 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre11g04050 258 PRINTS Natural resistance-associated macrophage protein signature 232 255 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre11g04050 258 PRINTS Natural resistance-associated macrophage protein signature 129 155 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre11g04050 258 PRINTS Natural resistance-associated macrophage protein signature 157 176 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre11g04050 258 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 24 258 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04050 Trre-Chr11 53567392 53569333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04050 16 258 Inorganic Solute Cotransporters AT1G15960 83.128 4.69e-149 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04050 K21398 - gmx:100797298 444.891