Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04049 ATGAAATTGAAAATCCATATACAAGCTCTTTTTGGATTGATGTTGATCTATATAGTACAGTTTTCACTTGCTGCTACTAATCCCTCTGATGTTGCTGCTATTAATAGATTATATGCTGCATTGGGCAACCCTGTTCTTCCTGGGTGGGTTGCTAGTGCGGGAGATCCGTGCGGAGAAGCGTGGCAAGGTGTTCAATGTAATGATTCACTCATACAAGAAATAACTCTGATTGGTGCAAATTTGGGAGGAGAACTTGGCGATAGCTTGGGAACGTTTGTTTCTATCAAATCAATATCGCTAAGCAACAACCACATTGGAGGAATTATTCCAACAAGTTTGCCAGCTACCTTGCAAACGCTTTTTCTTTCGGGTAACAATCTCACTGGAAGTATTCCACCCACTTTATCCACATTGACAGAACTTACCGCTTTGTCTCTTAATGATAATCAGTTAACTGGGGAAATACCAGATGCCTTTCAGTCTCTTACGCAATTGACCAATCTAGATTTATCTCATAATAATTTGAGTGGAGAATTGCCTCCATCTGTAGAAAGTTTGTCAGCTGTGACGACCTTAGATTTACAGAACAACAACCTGTCTGGGACACTCGATGTTTTACAAGATCTTTCACTGACAGATTTGAATGTTGAGAACAACCAGTTTTCTGGAAGAATACCTCCGAAGTTGTTAAGCATCACCAACTTCAGAAAAGATGGAAACCAATTTGACCTTAGTGGTAATGATACTATAGCTCCAGCTCGTCCACCTCATTCTCCAGTAACAACCTCACCATCAGGAACTGTGGTTCCTGGGACGCCATCTTCTGGACGTGTACCTAGTGGACGTGTACCTACTAAACCGGCTGATGAACCAACTGCATCAAAAGAATCAAGTTCCGGAAAATCGAAAAAAAATACCAAAAGAGTGATTTGGATAACTATTTCTGGTGTATTGGGATTTATAATTTTGGCACTGGCACTTGTTCTCTTTCTTCCAAGATGTAGCAAAAGGGAACGGGGCGGAAGAACCTCCAAACAACATCAGATTGGAGCATATGGAGGCGAAAGAACGAATCCTTGGAATAATGGGGCACTAGTCCAACCACCTAGTCAAACTCAGAAAGTACCAAAAGTGGCTGTTGCACGGCCAAAAGAGAATCCTCGAGTAGTGCAAGATGAACCAAAAATGGAAACACTGCCGAAGCTATTAAATCATGAGATAGATATGAGTGGACTAGATTTAGATTCAATGCCACCTTCACCCCCACCTCCTCCACCTCCTGCTCCACCACTTGCCGCTGAGAAGTTGATTGTCGAGCCAACCACATCCACTGGAGGGGATCCTTCCAAAAGAAGTTCTTTTCCGCCGACCTTTGCAAAATCTTTCACCATTGCATCGCTTCAACAGTATACAAATAGCTTTTCTCAAGACAATCTTATAGGATTAGGCATGTTGGGGAGTGTATATAGAGCCGAGCTTCCTAATGGGAAGATACTCGCTGTGAAGAAACTAGACAAGAGAGTTTCCGACCACCAAGAAGATGATGAGTTTCTTGAATTGGTAAACAATATTGACAGAATTCGGCATGCAAACATTGTTGAGCTTATCGGCTACTGCGTAGAGCATGGACAAAGGCTTCTGATCTATGAATACTGCAGTAATGGGTCGATGTACGAAGCACTTCATTCAGATGACGAATACAAAACAACATTGTCTTGGAATGCTCGCATTCGGATAGCACTTGGAGCAGCCAGAGCCTTAGAGTACTTGCATGAGCAATGTCAGCCACCTGTTATACACAGAAATTTCAAGTCTGCTAACATTCTCCTTGATGAAGATCTATCCGTGCGTGTATCTGACTGTGGTTTGGCTCCATTAATAACTAAAGGCTCTGTACGTCAGCTCTCAGGACAGCTGCTAGCAGCTTATGGCTACGGGGCTCCAGAATTTGAGTCGGGAATATACACCTACCAGAGTGACGTGTACAGCTTTGGAGTGGTTATGTTAGAACTTTTGACTGGTCGTCAGTCCTATGACAGGAAACGACCTCGTGGTGAGCAGTTTCTTGTAAGATGGGCTATTACTCAACTTCATGATATTGATGCATTAGCAAGGATGGTCGATCCTTCTCTAAATGGAGCTTACCCGGCCAAATCTTTGTCAAATTTCGCAGACATTATTTCTAGATGTGTTCAGTCCGAGCCGGAATTTAGGCCAGCAATGTCTGAGGTTGTCTTGTACCTGCTAAATATGATAAGGAGGGAGTCTCAACAAAATGAATCAAATGAAAGATGA 2295 0.427 MKLKIHIQALFGLMLIYIVQFSLAATNPSDVAAINRLYAALGNPVLPGWVASAGDPCGEAWQGVQCNDSLIQEITLIGANLGGELGDSLGTFVSIKSISLSNNHIGGIIPTSLPATLQTLFLSGNNLTGSIPPTLSTLTELTALSLNDNQLTGEIPDAFQSLTQLTNLDLSHNNLSGELPPSVESLSAVTTLDLQNNNLSGTLDVLQDLSLTDLNVENNQFSGRIPPKLLSITNFRKDGNQFDLSGNDTIAPARPPHSPVTTSPSGTVVPGTPSSGRVPSGRVPTKPADEPTASKESSSGKSKKNTKRVIWITISGVLGFIILALALVLFLPRCSKRERGGRTSKQHQIGAYGGERTNPWNNGALVQPPSQTQKVPKVAVARPKENPRVVQDEPKMETLPKLLNHEIDMSGLDLDSMPPSPPPPPPPAPPLAAEKLIVEPTTSTGGDPSKRSSFPPTFAKSFTIASLQQYTNSFSQDNLIGLGMLGSVYRAELPNGKILAVKKLDKRVSDHQEDDEFLELVNNIDRIRHANIVELIGYCVEHGQRLLIYEYCSNGSMYEALHSDDEYKTTLSWNARIRIALGAARALEYLHEQCQPPVIHRNFKSANILLDEDLSVRVSDCGLAPLITKGSVRQLSGQLLAAYGYGAPEFESGIYTYQSDVYSFGVVMLELLTGRQSYDRKRPRGEQFLVRWAITQLHDIDALARMVDPSLNGAYPAKSLSNFADIISRCVQSEPEFRPAMSEVVLYLLNMIRRESQQNESNER 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04049 764 Pfam Protein tyrosine and serine/threonine kinase 477 746 IPR001245 GO:0004672|GO:0006468
Trre11g04049 764 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 440 551 - -
Trre11g04049 764 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 67 745 - -
Trre11g04049 764 MobiDBLite consensus disorder prediction 339 359 - -
Trre11g04049 764 MobiDBLite consensus disorder prediction 410 432 - -
Trre11g04049 764 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 27 254 - -
Trre11g04049 764 ProSiteProfiles Leucine-rich repeat profile. 116 139 IPR001611 GO:0005515
Trre11g04049 764 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Trre11g04049 764 SUPERFAMILY Protein kinase-like (PK-like) 452 748 IPR011009 -
Trre11g04049 764 SUPERFAMILY L domain-like 26 235 - -
Trre11g04049 764 ProSiteProfiles Leucine-rich repeat profile. 164 186 IPR001611 GO:0005515
Trre11g04049 764 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515
Trre11g04049 764 MobiDBLite consensus disorder prediction 416 432 - -
Trre11g04049 764 Gene3D Ribonuclease Inhibitor 27 256 IPR032675 -
Trre11g04049 764 MobiDBLite consensus disorder prediction 243 305 - -
Trre11g04049 764 ProSiteProfiles Protein kinase domain profile. 474 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04049 764 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 552 762 - -
Trre11g04049 764 Gene3D Phosphorylase Kinase; domain 1 444 551 - -
Trre11g04049 764 Gene3D Transferase(Phosphotransferase) domain 1 552 764 - -
Trre11g04049 764 MobiDBLite consensus disorder prediction 260 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04049 Trre-Chr11 53532743 53537635 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04049 16 755 Strubbelig Receptor Gene Family AT4G03390 62.202 0.0 863
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trre11g04049 PK_Tyr_Ser-Thr 4.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04049 - - mtr:25487613 1246.88