Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04048 ATGAGTGAGATGAGATCTACTTCACTGTACAAGAGAATGAAATTGAAAATCCATATACAAGCTCTTTTTGGATTGATGTTGATCTATATAGTACAGTTTTCACTTGCTGCTACTAATCCCTCTGATGTTGCTGCTATTAATAGATTATATGCTGCATTGGGCAACCCTGTTCTTCCTGGGTGGGTTGCTAGTGCGGGAGATCCGTGCGGAGAAGCGTGGCAAGGTGTTCAATGTAATGATTCACTCATACAAGAAATAACTCTGATTGGTGCAAATTTGGGAGGAGAACTTGGCGATAGCTTGGGAACGTTTGTTTCTATCAAATCAATATCGCTAAGCAACAACCACATTGGAGGAATTATTCCAACAAGTTTGCCAGCTACCTTGCAAACGCTTTTTCTTTCGGGTAACAATCTCACTGGAAGTATTCCACCCACTTTATCCACATTGACAGAACTTACCGCTTTGTCTCTTAATGATAATCAGTTAACTGGGGAAATACCAGATGCCTTTCAGTCTCTTACGCAATTGACCAATCTAGATTTATCTCATAATAATTTGAGTGGAGAATTGCCTCCATCTGTAGAAAGTTTGTCAGCTGTGACGACCTTAGATTTACAGAACAACAACCTGTCTGGGACACTCGATGTTTTACAAGATCTTTCACTGACAGATTTGAATGTTGAGAACAACCAGTTTTCTGGAAGAATACCTCCGAAGTTGTTAAGCATCACCAACTTCAGAAAAGATGGAAACCAATTTGACCTTAGTGGTAATGATACTATAGCTCCAGCTCGTCCACCTCATTCTCCAGTAACAACCTCACCATCAGGAACTGTGGTTCCTGGGACGCCATCTTCTGGACGTGTACCTAGTGGACGTGTACCTACTAAACCGGCTGATGAACCAACTGCATCAAAAGAATCAAGTTCCGGAAAATCGAAAAAAAATACCAAAAGAGTGATTTGGATAACTATTTCTGGTGTATTGGGATTTATAATTTTGGCACTGGCACTTGTTCTCTTTCTTCCAAGATGTAGCAAAAGGGAACGGGGCGGAAGAACCTCCAAACAACATCAGATTGGAGCATATGGAGGCGAAAGAACGAATCCTTGGAATAATGGGGCACTAGTCCAACCACCTAGTCAAACTCAGAAAGTACCAAAAGTGGCTGTTGCACGGCCAAAAGAGAATCCTCGAGTAGTGCAAGATGAACCAAAAATGGAAACACTGCCGAAGCTATTAAATCATGAGATAGATATGAGTGGACTAGATTTAGATTCAATGCCACCTTCACCCCCACCTCCTCCACCTCCTGCTCCACCACTTGCCGCTGAGAAGTTGATTGTCGAGCCAACCACATCCACTGGAGGGGATCCTTCCAAAAGAAGTTCTTTTCCGCCGACCTTTGCAAAATCTTTCACCATTGCATCGCTTCAACAGTATACAAATAGCTTTTCTCAAGACAATCTTATAGGATTAGGCATGTTGGGGAGTGTATATAGAGCCGAGCTTCCTAATGGGAAGATACTCGCTGTGAAGAAACTAGACAAGAGAGTTTCCGACCACCAAGAAGATGATGAGTTTCTTGAATTGGTAAACAATATTGACAGAATTCGGCATGCAAACATTGTTGAGCTTATCGGCTACTGCGTAGAGCATGGACAAAGGCTTCTGATCTATGAATACTGCAGTAATGGGTCGATGTACGAAGCACTTCATTCAGATGACGAATACAAAACAACATTGTCTTGGAATGCTCGCATTCGGATAGCACTTGGAGCAGCCAGAGCCTTAGAGTACTTGCATGAGCAATGTCAGCCACCTGTTATACACAGAAATTTCAAGTCTGCTAACATTCTCCTTGATGAAGATCTATCCGTGCGTGTATCTGACTGTGGTTTGGCTCCATTAATAACTAAAGGCTCTGTACGTCAGCTCTCAGGACAGCTGCTAGCAGCTTATGGCTACGGGGCTCCAGAATTTGAGTCGGGAATATACACCTACCAGAGTGACGTGTACAGCTTTGGAGTGGTTATGTTAGAACTTTTGACTGGTCGTCAGTCCTATGACAGGAAACGACCTCGTGGTGAGCAGTTTCTTGTAAGATGGGCTATTACTCAACTTCATGATATTGATGCATTAGCAAGGATGGTCGATCCTTCTCTAAATGGAGCTTACCCGGCCAAATCTTTGTCAAATTTCGCAGACATTATTTCTAGATGTGTTCAGTCCGAGCCGGAATTTAGGCCAGCAATGTCTGAGGTTGTCTTGTACCTGCTAAATATGATAAGGAGGGAGTCTCAACAAAATGAATCAAATGAAAGATGA 2331 0.4264 MSEMRSTSLYKRMKLKIHIQALFGLMLIYIVQFSLAATNPSDVAAINRLYAALGNPVLPGWVASAGDPCGEAWQGVQCNDSLIQEITLIGANLGGELGDSLGTFVSIKSISLSNNHIGGIIPTSLPATLQTLFLSGNNLTGSIPPTLSTLTELTALSLNDNQLTGEIPDAFQSLTQLTNLDLSHNNLSGELPPSVESLSAVTTLDLQNNNLSGTLDVLQDLSLTDLNVENNQFSGRIPPKLLSITNFRKDGNQFDLSGNDTIAPARPPHSPVTTSPSGTVVPGTPSSGRVPSGRVPTKPADEPTASKESSSGKSKKNTKRVIWITISGVLGFIILALALVLFLPRCSKRERGGRTSKQHQIGAYGGERTNPWNNGALVQPPSQTQKVPKVAVARPKENPRVVQDEPKMETLPKLLNHEIDMSGLDLDSMPPSPPPPPPPAPPLAAEKLIVEPTTSTGGDPSKRSSFPPTFAKSFTIASLQQYTNSFSQDNLIGLGMLGSVYRAELPNGKILAVKKLDKRVSDHQEDDEFLELVNNIDRIRHANIVELIGYCVEHGQRLLIYEYCSNGSMYEALHSDDEYKTTLSWNARIRIALGAARALEYLHEQCQPPVIHRNFKSANILLDEDLSVRVSDCGLAPLITKGSVRQLSGQLLAAYGYGAPEFESGIYTYQSDVYSFGVVMLELLTGRQSYDRKRPRGEQFLVRWAITQLHDIDALARMVDPSLNGAYPAKSLSNFADIISRCVQSEPEFRPAMSEVVLYLLNMIRRESQQNESNER 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04048 776 ProSiteProfiles Leucine-rich repeat profile. 128 151 IPR001611 GO:0005515
Trre11g04048 776 SUPERFAMILY Protein kinase-like (PK-like) 464 760 IPR011009 -
Trre11g04048 776 MobiDBLite consensus disorder prediction 428 444 - -
Trre11g04048 776 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 39 266 - -
Trre11g04048 776 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 564 774 - -
Trre11g04048 776 Gene3D Transferase(Phosphotransferase) domain 1 564 776 - -
Trre11g04048 776 MobiDBLite consensus disorder prediction 255 317 - -
Trre11g04048 776 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Trre11g04048 776 ProSiteProfiles Protein kinase domain profile. 486 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04048 776 MobiDBLite consensus disorder prediction 272 286 - -
Trre11g04048 776 Gene3D Phosphorylase Kinase; domain 1 456 563 - -
Trre11g04048 776 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 84 757 - -
Trre11g04048 776 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 452 563 - -
Trre11g04048 776 SUPERFAMILY L domain-like 38 247 - -
Trre11g04048 776 MobiDBLite consensus disorder prediction 351 371 - -
Trre11g04048 776 MobiDBLite consensus disorder prediction 422 444 - -
Trre11g04048 776 Pfam Leucine rich repeat 128 187 IPR001611 GO:0005515
Trre11g04048 776 Pfam Protein tyrosine and serine/threonine kinase 489 758 IPR001245 GO:0004672|GO:0006468
Trre11g04048 776 Gene3D Ribonuclease Inhibitor 39 268 IPR032675 -
Trre11g04048 776 ProSiteProfiles Leucine-rich repeat profile. 176 198 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04048 Trre-Chr11 53532743 53537671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04048 28 767 Strubbelig Receptor Gene Family AT4G03390 62.202 0.0 862
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trre11g04048 PK_Tyr_Ser-Thr 4.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04048 - - mtr:25487613 1265.37