Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04007 ATGATAAAATACACAGAGCGTGTTCTCATCTTCCCTTCTCACCCTCCCTTCCTCCACGACCACTCTCTCCCTCTCTCCCACCTTGACACCGACCGCAACCTCCATGTCACCTTCCGCTACCTCCGCGCTTATGTCAATGCCACCGCGGTCACTACTTCCGACCCCTTCCACGTCATCTCTTCCTCCCTCTCCCAAGCTCTCATTCACTACTACCCACTCGCCGGCACGCTTCGCCACCGCCAGGACCAAGACCGCCGCCTCGAACTCCATTGCACCCCCGGCCAAGGCATCCCTCTCATCCGCGCCACCGCCGACTTCACACTCAATTCTGTCAACTACCTCGAAGACCCGAAAGCCCCCTTCATCGAGCAGCTGGTGCCTGACCCGGGAACCGAAGAGGGGTTGGAGCACCCGTTCATGCTTCAGCTGACGTTGTTCAAGTGCGGCGGGTACACTCTTGGGGTGGCCACGCACCACGCGCTCTGCGATGGGATGGGCGGTGGGCTGTTTTTCAACACAGCGGCTGAATTGGCTCGCGGGGCAACACGGATCACGGTGGAGCCGGTGTGGGAGCGGGAGAGGTTGTTAGGTCCCAGGGTTCCTCCCCGAGTGGATTCGCCTTTGATAGAGGAATTTCTGAGTTTGGATAAGAGTGTAATACCTTATGATGAGGACATTGGTGGGGTTGTGAGAGAGTGCTTTGATGTGAGGGATGATTGCTTGGATAAGTTTAAGAAGGACTTGTTTCAACAATCTGGCTTAAACTTCACTACTTTTGAGGCTCTTGGTGCTTACATTTGGAGATCCAAGGTAAGGGCCTCAGGAGTGAAGGGTGATGAGAAGGTTAAGTTTGCATACTCAATCAATATAAGGAGACTGGTAAAGCCATCAACACCTGCTGGGTATTGGGGTAATGGTTGTGTTCCAATGTATGTGCAGCTGAGTGCTAAAGATTTGATAGAGAAACCCATTTGGGAAACAGCAAAGCTAATCAAAAAGAGTAAAAGCAATGTTACTGATGAGTATGTTCACTCCTTCATTGATTACCAGGAGCTTCATTTTGCAGATGGTATCACAGCAGGTAAAAGGATTAGTGGTTTCACAGATTGGAGACACTTAGGCCATGCTACTGTCGACTTTGGTTGGGGAGGGCCAGTTACTGTCTTGGCACTTGGAAAGAACTTGCTTGGAAGTGTTGACCCTTGCTACTTTTTGCCTTATTCAACTGCCAGTGCAGGGAAGAAAGAGGGATTCAAGGTTTTGATCACTTTGGCAGAGGCTGCTGTTCCTTCTGTTAGCAAAGATATGCTAGTTTTTGCCACTATCCAAGAACAAGTTGTTTGA 1344 0.5067 MIKYTERVLIFPSHPPFLHDHSLPLSHLDTDRNLHVTFRYLRAYVNATAVTTSDPFHVISSSLSQALIHYYPLAGTLRHRQDQDRRLELHCTPGQGIPLIRATADFTLNSVNYLEDPKAPFIEQLVPDPGTEEGLEHPFMLQLTLFKCGGYTLGVATHHALCDGMGGGLFFNTAAELARGATRITVEPVWERERLLGPRVPPRVDSPLIEEFLSLDKSVIPYDEDIGGVVRECFDVRDDCLDKFKKDLFQQSGLNFTTFEALGAYIWRSKVRASGVKGDEKVKFAYSINIRRLVKPSTPAGYWGNGCVPMYVQLSAKDLIEKPIWETAKLIKKSKSNVTDEYVHSFIDYQELHFADGITAGKRISGFTDWRHLGHATVDFGWGGPVTVLALGKNLLGSVDPCYFLPYSTASAGKKEGFKVLITLAEAAVPSVSKDMLVFATIQEQVV 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04007 447 Gene3D - 226 434 IPR023213 -
Trre11g04007 447 Gene3D - 1 210 IPR023213 -
Trre11g04007 447 Pfam Transferase family 2 435 - -
Trre11g04007 447 PANTHER ACYL TRANSFERASE 4 5 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04007 Trre-Chr11 53305410 53307089 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04007 54 386 Monolignol Biosynthesis Gene Families AT5G48930 30.682 7.87e-38 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04007 - - gmx:100817021 684.871