Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04000 ATGGTGAAGGTAATAGAGCAGAGTCAAGTTACACCACCACCCGGTTCACTTCCATCACCAACCACACTCCCTCTCACCGTCTTCGACACTCCATGGTTTTACTGTCAATATCCGGTTAAACGCATATTCTTCTACAACTTTCCTCATCCAACTCATCACTTCCTTCAAACTACACTTCCCATTCTCAAACACTCTCTTTCTTTAACCCTCCAACACTTCTTCCCCTTCTCCTCCAATCTCATCATCCCTTCAAATTCCCAAAACGCCCCTTACATTCGTTACCTCAACACCGACGCTCTCTCTTTCACCGTAGCTGAATCCTCAGCAGACTTTAACCTCCTCATATCTGATTCACAAGATGCTCAAAACTGGCACTCTCTTGTTCCAAATTTGCCTCCACCTAGTACTGAACAGAACAACACACAAGTCATTCCACTAATGGCCATTCAAGTAACTATTATGCCCAACTCCGGCTTATCTATCTGTCTCGCGTTCAAACATGTGGCTGCAGATGGAAAATCACTTCACCATTTCATGAAATTTTGGGCCTCTGTTTCAAAACACATAGCAAACAACAAAAACAATTCGTCTCTCGAACTCGATCTTCCTTCCCATGAAAGACAAACAATACTTAATACCTCAAAGGATCCTAAGATAACCTACTTACAAGAAACACAAGATTATGTATTAAAAAAAGTCGAATTCGCAGGTCTCGTTCTGGATGTTCATCCTAATAATGTACGAACTTGTTTAGTGTTGAATCATGAACAAATTCAGAAACTGAAGAAGTGGATCATTGATAAATGTATAGACACAACACAACACATTTCAACTTTTGTGGTAACATGTTCCTTGATCTGGTTTTGTATGGTAAAATCAAAGCAAATTGATCAAGGTGATTGTGTTAATGTTGTTGATGATCTATGCAACTTTCTGTTTTATGCAGATTGTCGTGGTCGTCGTGAATTTTCATTATCAAAAACTTATTTTGGAAATTGTCTTGCATCTTATATTGTGGCTGTAAAGAGAGATGAGTTAGTTGGAAAAAATGGTATTGTTGTCGCGGCAAATGTTATTGATAGGAAGATAAGAGAATTCAAGAGTGATGCTATGTTAGGATCTGAAACGATGATGCTTGATTATAAGGAATTATTCAAACCAGGTAAGTCTATTGTAATGGTTTCTGGATCACCTAAACTTGATGTTTATGAGACTGATTTTGGGTGGGGGAAGCCTAAGAAATCTGATGTAGTTCATCATGATTCCTCCGGTACGATTTCTCTGTCTGATTGTAGAGATGGTGGAAGCGGAATTGAGATTGGTTTGGCTCTCGAGAGGTCTCGAATGAATAATTTCATGAACATCTTTCATGAACAACTTGATAGTATTTGTAGCATGTGA 1401 0.3883 MVKVIEQSQVTPPPGSLPSPTTLPLTVFDTPWFYCQYPVKRIFFYNFPHPTHHFLQTTLPILKHSLSLTLQHFFPFSSNLIIPSNSQNAPYIRYLNTDALSFTVAESSADFNLLISDSQDAQNWHSLVPNLPPPSTEQNNTQVIPLMAIQVTIMPNSGLSICLAFKHVAADGKSLHHFMKFWASVSKHIANNKNNSSLELDLPSHERQTILNTSKDPKITYLQETQDYVLKKVEFAGLVLDVHPNNVRTCLVLNHEQIQKLKKWIIDKCIDTTQHISTFVVTCSLIWFCMVKSKQIDQGDCVNVVDDLCNFLFYADCRGRREFSLSKTYFGNCLASYIVAVKRDELVGKNGIVVAANVIDRKIREFKSDAMLGSETMMLDYKELFKPGKSIVMVSGSPKLDVYETDFGWGKPKKSDVVHHDSSGTISLSDCRDGGSGIEIGLALERSRMNNFMNIFHEQLDSICSM 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04000 466 Gene3D - 243 463 IPR023213 -
Trre11g04000 466 Gene3D - 1 234 IPR023213 -
Trre11g04000 466 PANTHER - 2 461 - -
Trre11g04000 466 Pfam Transferase family 2 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04000 Trre-Chr11 53217845 53219245 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04000 42 458 Monolignol Biosynthesis Gene Families AT5G48930 21.609 4.29e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04000 - - tpra:123894645 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04000 11 53217845 53219245 Trre11g04000 11 53217845 53219245 ECH