Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03999 ATGGCAGAGCCTATAGGAACAAAACATAAGCTTATTGAACAAATTATGATTTCTCCATCATCAACAACAACAATTTCTCTTCCTCTAACATTTCTTGATTTACCTTTAGCAGGTCCAATCTATGTTAGACGCCAATTCTTCTATCAATTTCCACATTCAACAAACCATTTTCACAAAACAACATTTCCATCTCTCAAACAATCACTATCTCTCACTCTTCAACATTTTTTCCCTCTTGCTGGAAATCTCATCTCTCCACCATCACCAAACAAACCCTTCATTATTTGCACTAAAAAAGACTCTGTCCCTTTTACCGTCATCGAATCTTCGGAAGATTTCAACCATCTTTCAGCCAATTACCACCTTAAAAATATCAAAGACTTTAGCCACCTTGTTCCAAAATTAACATATAAAACAATCCATGATGATAATGACATTGACAATGATACTTTTGTCTTTCCTTTGTTGTCTTTGCAAGCTTCTGTTTTTCCTAACAATGGTCTTTGCATTGCAATCACATATTGTCATGTTATGGATGATAGTTGTTGTAGTCATTTCATGAAGACTTGGTCTTTTATCAATAGAAAATGTAAATGTGAAGGTGTTGACTTGAAGTCAACGCCTTGTTTTGATAGAGAAATTTTGAGGGATCCAAAAGGGTTACTTGAGAATGTTTTCTTAAGAGACTATTTTGAAGAAAGAAAAACATGGAAGAATAAACTCATAGGTCAAAGTCAAACTCAAAGTCAAACTATTGGAGAACATCATAAAGTTGAAGATTATTTCAAAGCAACTATAGTTTTTGGAAAAGAAGATATTGAGAGAATGAAAAAATGGGTACTTAGTCAATGGAAGAAAAATGATGATGAAAGTATAAAGCCACAATTTTTATCTAAATTTGTTGTAACTTGTGGTTTTGTTTGGGCTAGTTTGGTTAAAACAAGATATAGAAATAATAATAATGATGATGAAAAAGAAGAGTTTTTTCGTTTTGCAGGTGATTGTAGAGATAGACTTGGGTACAAAATACCAGAAGGGTATTTTGGGAATTGTTTAACACTATGTCATGCAACAGTGAAGAGAAAAGATATGAAAGGGGAAGATGGTTTTGTGAAAGCTGTTAAGGTAATTGAAAAGGCAATAAGTGAAATGAAAAATGAACCTTTTAAAAATGTAGATGAATGGAGAGATACATTTAAGAAGATGTTTGATTTGGGAAGTGTTTTGTTGGTAACAGGTTCACCTAAGTTTAATGTTTATGAGACTGATTTTGGATTTGGAAAACCTATTAAAGTTGAAATGGTGCATTCTTTTAAGTGTATGTCTATTTCTGAAAGTGGAGATAGAGAAGGTGGACTTGAGTTTGGGTTGGTATTCAAAAATGGTGAATTTGAATATTTCTGTTCTGTTATTGAACAAGGACTTGAAGCTTTTAAATCCTAA 1443 0.325 MAEPIGTKHKLIEQIMISPSSTTTISLPLTFLDLPLAGPIYVRRQFFYQFPHSTNHFHKTTFPSLKQSLSLTLQHFFPLAGNLISPPSPNKPFIICTKKDSVPFTVIESSEDFNHLSANYHLKNIKDFSHLVPKLTYKTIHDDNDIDNDTFVFPLLSLQASVFPNNGLCIAITYCHVMDDSCCSHFMKTWSFINRKCKCEGVDLKSTPCFDREILRDPKGLLENVFLRDYFEERKTWKNKLIGQSQTQSQTIGEHHKVEDYFKATIVFGKEDIERMKKWVLSQWKKNDDESIKPQFLSKFVVTCGFVWASLVKTRYRNNNNDDEKEEFFRFAGDCRDRLGYKIPEGYFGNCLTLCHATVKRKDMKGEDGFVKAVKVIEKAISEMKNEPFKNVDEWRDTFKKMFDLGSVLLVTGSPKFNVYETDFGFGKPIKVEMVHSFKCMSISESGDREGGLEFGLVFKNGEFEYFCSVIEQGLEAFKS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03999 480 Pfam Transferase family 12 439 - -
Trre11g03999 480 Gene3D - 9 241 IPR023213 -
Trre11g03999 480 PANTHER - 10 477 - -
Trre11g03999 480 Gene3D - 258 478 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03999 Trre-Chr11 53214606 53216048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03999 46 430 Monolignol Biosynthesis Gene Families AT5G48930 24.060 2.10e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03999 - - tpra:123894642 859.366