Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03998 ATGCTTATTAACTACATTAATACTCATGGACCTGGAAATTGGCGCAACCTTCCTAAAAATGCTGGTCTTCAAAGGTGCGGCAAGAGTTGTCGGCTTCGATGGACGAATTATCTGAGGCCTGATATCAAGAGAGGGAGATTTTCCTTTGAAGAAGAAGAGACTATCATTCAACTCCATAGTGTCTTGGGAAACAAGTGGTCGGCTATAGCTGCTAGATTACCTGGAAGAACGGACAATGAAATAAAGAATTACTGGAACACGCATATAAGGAAGAGACTACTTAGAAATGGAATTGACCCCGTTACTCACACTCCGCGTCTTGATCATCTATTCGACATGTCCTCCATTAATATTCTCAGATCAGCTTTATTAGGAGGAACCAATTCATCATTTCTGAACCTATTAGGTGGAGCTCAAGCTTTGATGAATCCTGAATTGTTAAAGCTAGCTGCAACTGCAACACTATTAAACAACCACAACATGAATTTGGTTTCACAAAATCCACAACAAATCAATAATGTTGCTAATTGTACTCATCAACAAGTGCAAAGTCAAGTTTACCCTCAAGATCAATTTCAAACACCAACTCAAATCAACAATGTGAATAATGGCTTATTAGGAAACATGAGTTGTTCAAGTTCAGCTGAAAATTCAAATCCTAGTTATTTTGGAGAGGATTTGATTTCTAAGCAATATTCAGAATTGTTTCATTGTCTTAATGATGTAAACAAAAATAATACGGGGTATGAATCGGTTATATCGTCTACGCCTTTATCGACAACACCAACGCCAACACCATTGAATTCACCATCAACATATGTGAATAGCAACACAGAGGAAGAAAGAGACACATATTGCAGTGACATATTCAAATTTGAGATTCCAGAGGGTACTTTGGACATTAATGATTTTATGTAA 918 0.3725 MLINYINTHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVLGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRNGIDPVTHTPRLDHLFDMSSINILRSALLGGTNSSFLNLLGGAQALMNPELLKLAATATLLNNHNMNLVSQNPQQINNVANCTHQQVQSQVYPQDQFQTPTQINNVNNGLLGNMSCSSSAENSNPSYFGEDLISKQYSELFHCLNDVNKNNTGYESVISSTPLSTTPTPTPLNSPSTYVNSNTEEERDTYCSDIFKFEIPEGTLDINDFM 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03998 305 Pfam Myb-like DNA-binding domain 2 38 IPR001005 -
Trre11g03998 305 Pfam Myb-like DNA-binding domain 44 88 IPR001005 -
Trre11g03998 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 93 IPR017930 -
Trre11g03998 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 231 - -
Trre11g03998 305 Gene3D - 46 93 - -
Trre11g03998 305 ProSiteProfiles Myb-like domain profile. 1 38 IPR001005 -
Trre11g03998 305 ProSiteProfiles Myb-like domain profile. 39 89 IPR001005 -
Trre11g03998 305 SMART sant 1 40 IPR001005 -
Trre11g03998 305 SMART sant 43 91 IPR001005 -
Trre11g03998 305 MobiDBLite consensus disorder prediction 253 279 - -
Trre11g03998 305 FunFam MYB-related transcription factor 1 43 - -
Trre11g03998 305 SUPERFAMILY Homeodomain-like 1 85 IPR009057 -
Trre11g03998 305 FunFam Transcription factor MYB39 46 107 - -
Trre11g03998 305 CDD SANT 1 38 IPR001005 -
Trre11g03998 305 CDD SANT 46 89 IPR001005 -
Trre11g03998 305 Gene3D - 1 43 - -
Trre11g03998 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 38 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03998 Trre-Chr11 53203330 53204816 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03998 2 305 MYB Transcription Factor Family AT4G21440 44.886 1.01e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre11g03998 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03998 K09422 - gmx:102668351 365.54