Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03997 ATGGGAAGATCACCTTGTTGTGATAATAAAAATGGACTCAAAAAAGGTCCATGGACAAATGAAGAAGATCAGATGCTTATTAACTACATTAATACTCATGGACCTGGAAATTGGCGCAACCTTCCTAAAAATGCTGGTCTTCAAAGGTGCGGCAAGAGTTGTCGGCTTCGATGGACGAATTATCTGAGGCCTGATATCAAGAGAGGGAGATTTTCCTTTGAAGAAGAAGAGACTATCATTCAACTCCATAGTGTCTTGGGAAACAAGTGGTCGGCTATAGCTGCTAGATTACCTGGAAGAACGGACAATGAAATAAAGAATTACTGGAACACGCATATAAGGAAGAGACTACTTAGAAATGGAATTGACCCCGTTACTCACACTCCGCGTCTTGATCATCTATTCGACATGTCCTCCATTAATATTCTCAGATCAGCTTTATTAGGAGGAACCAATTCATCATTTCTGAACCTATTAGGTGGAGCTCAAGCTTTGATGAATCCTGAATTGTTAAAGCTAGCTGCAACTGCAACACTATTAAACAACCACAACATGAATTTGGTTTCACAAAATCCACAACAAATCAATAATGTTGCTAATTGTACTCATCAACAAGTGCAAAGTCAAGTTTACCCTCAAGATCAATTTCAAACACCAACTCAAATCAACAATGTGAATAATGGCTTATTAGGAAACATGAGTTGTTCAAGTTCAGCTGAAAATTCAAATCCTAGTTATTTTGGAGAGGATTTGATTTCTAAGCAATATTCAGAATTGTTTCATTGTCTTAATGATGTAAACAAAAATAATACGGGGTATGAATCGGTTATATCGTCTACGCCTTTATCGACAACACCAACGCCAACACCATTGAATTCACCATCAACATATGTGAATAGCAACACAGAGGAAGAAAGAGACACATATTGCAGTGACATATTCAAATTTGAGATTCCAGAGGGTACTTTGGACATTAATGATTTTATGTAA 990 0.3717 MGRSPCCDNKNGLKKGPWTNEEDQMLINYINTHGPGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVLGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRNGIDPVTHTPRLDHLFDMSSINILRSALLGGTNSSFLNLLGGAQALMNPELLKLAATATLLNNHNMNLVSQNPQQINNVANCTHQQVQSQVYPQDQFQTPTQINNVNNGLLGNMSCSSSAENSNPSYFGEDLISKQYSELFHCLNDVNKNNTGYESVISSTPLSTTPTPTPLNSPSTYVNSNTEEERDTYCSDIFKFEIPEGTLDINDFM 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03997 329 MobiDBLite consensus disorder prediction 277 303 - -
Trre11g03997 329 FunFam MYB-related transcription factor 14 67 - -
Trre11g03997 329 SMART sant 67 115 IPR001005 -
Trre11g03997 329 SMART sant 14 64 IPR001005 -
Trre11g03997 329 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Trre11g03997 329 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Trre11g03997 329 FunFam Transcription factor MYB39 70 131 - -
Trre11g03997 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Trre11g03997 329 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre11g03997 329 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Trre11g03997 329 Gene3D - 14 67 - -
Trre11g03997 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Trre11g03997 329 CDD SANT 70 113 IPR001005 -
Trre11g03997 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 254 - -
Trre11g03997 329 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Trre11g03997 329 CDD SANT 17 62 IPR001005 -
Trre11g03997 329 Gene3D - 70 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03997 Trre-Chr11 53203330 53204888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03997 1 329 MYB Transcription Factor Family AT4G21440 47.215 4.35e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre11g03997 Myb_DNA-binding 5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03997 K09422 - gmx:102668351 408.297