Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03990 ATGGAGTTTAACCTTGAAAACCCTCTTGAAAACTTCCATGACCTTCCTAATTCTCAATGTGTTTCTTCTCTTTTCCTCATTGAATCTGACCACATCCCACCATTAAATTACTTTCATAGTCTCAAATCAAACGAGTTTGATGTTTCGGTTAGAAGTGATTTCATCTCTTTAATCTCGCAGTTATCCTATAACTTTGATCCATTTGTGACTTATCTAGCTATCAACTATTTGGATCGCTTCCTTGCTAACCAAGGGATATTGCAGCCAAAGCCATGGGCAAATAAACTTATTGCAGTAACTTGCTTCTCTCTAGCAATAAAGATGTTGAAAACAGAGTACTCTGCCACTGATGTTCAGGGTCTTCTGAATCATAGTGATGGTGGTTTCATATTTGAGACACAAACAATAAAAAGAATGGAAGCACTTGTCTTAGGAGCATTACATTGGAGAATGCGTTCAATCACTCCTTTCTCTTTCATTCCTTACTTCACCAATTTGTTTAGGCTTGATGATATAACATTAAAAGTTCTTAAAGATCGAGCTTCTGAAATTATTTTGAAGTCACAAAAAGATATTAAGGTTTTGGAATTCAAGCCATCTATAGTTGCTGCTTCATCTCTTCTTTATGCTTCACATGAATTATTTCCATTTCAATATCCAGGCTTCATGGGAACAATATCCGATTGTTCATATGTAAATAAAGAAAGTGTTGTGCAGTGCTATAATGTTATACAAGATATAGCTAAGGAAGAGTACGAATCCATGTTTAATGTGAATTCAAGTTCAGGCACACCAGTTAATGTGTTAGACGAAAATTTTCTAAGCTTGGAAAGTGAAAAAACCAATGGAACCAATGTTACTTCCACTAAGAGAAGGAAAATTTAA 885 0.3492 MEFNLENPLENFHDLPNSQCVSSLFLIESDHIPPLNYFHSLKSNEFDVSVRSDFISLISQLSYNFDPFVTYLAINYLDRFLANQGILQPKPWANKLIAVTCFSLAIKMLKTEYSATDVQGLLNHSDGGFIFETQTIKRMEALVLGALHWRMRSITPFSFIPYFTNLFRLDDITLKVLKDRASEIILKSQKDIKVLEFKPSIVAASSLLYASHELFPFQYPGFMGTISDCSYVNKESVVQCYNVIQDIAKEEYESMFNVNSSSGTPVNVLDENFLSLESEKTNGTNVTSTKRRKI 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03990 294 Pfam Cyclin, N-terminal domain 28 151 IPR006671 -
Trre11g03990 294 SUPERFAMILY Cyclin-like 136 249 IPR036915 -
Trre11g03990 294 SMART Cyclin_C_2 154 268 IPR004367 -
Trre11g03990 294 FunFam D6-type cyclin 34 149 - -
Trre11g03990 294 Gene3D - 23 242 - -
Trre11g03990 294 FunFam D6-type cyclin 150 242 - -
Trre11g03990 294 Pfam Cyclin, C-terminal domain 154 251 IPR004367 -
Trre11g03990 294 SUPERFAMILY Cyclin-like 19 151 IPR036915 -
Trre11g03990 294 CDD CYCLIN_AtCycD-like_rpt2 154 244 - -
Trre11g03990 294 Gene3D - 34 152 - -
Trre11g03990 294 PANTHER CYCLINS 35 253 IPR039361 -
Trre11g03990 294 SMART cyclin_7 158 246 IPR013763 -
Trre11g03990 294 SMART cyclin_7 53 145 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03990 Trre-Chr11 53121959 53124442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03990 1 293 Core Cell Cycle Gene Families AT4G03270 46.753 6.60e-78 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03990 K18812 - gmx:100799951 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03990 11 53121959 53124442 Trre11g03990 11 53121959 53124442 ECH