Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03989 ATGGTGATGAGAACTTATTTTTGTGACAAAAATGGTTTGAGAAAAGGCACGTGGACAACTGAGGAAGACAAAAAGTTGATTGCATATGTTACTAGGTATGGCTCTTGGAATTGGCGCCAACTACCTAAATTTGCAGGTCTTCAAAGGTGTGGGAAGAGTTGTAGATTAAGGTGGTTGAACTATCTAAGGCCAAATATCAAAAGAGGGAACTTTAGTCAACAAGAAGAAGAGACTATCATTAAACTTCACCAAGAATTGGGTAATAGATGGATCATGATTGCTGCAAATTTACCCGGAAGAACGGATAATGAAATAAAGAATCATTGGCATGCTACCTTAAAAAAGCGCATTATGAAAAATAACATGTCACACACTAAATGTGAAACACGAAAAGCCAAAGATTCAAAGTCTAATAATCACCCCACAATGGAAGAAGCAAAGAAAATTGATGGTGTATTAGAGAACAACAGTGATGCCAATATATCAAATCAACTTTGTTCACAACCATCTACAAGTGAATTTTCCTGCACAACAATGGATACTGCAGCTACCACAATATCATATGAAAATTCTCATTTTGATGACAATGAGATTCCATTTATGGATGCATACATGGAGGCTGTGAGTGAAAATTTCTGGACAGAGCCATATATGATAGAGAGTTCCTATGTCACTCCAAGTGAAGAAGCTATATGTGAACATGAATACCTTAGTCCTATGTACGATATAGAACTTTGGAGCAGTGTATAA 750 0.364 MVMRTYFCDKNGLRKGTWTTEEDKKLIAYVTRYGSWNWRQLPKFAGLQRCGKSCRLRWLNYLRPNIKRGNFSQQEEETIIKLHQELGNRWIMIAANLPGRTDNEIKNHWHATLKKRIMKNNMSHTKCETRKAKDSKSNNHPTMEEAKKIDGVLENNSDANISNQLCSQPSTSEFSCTTMDTAATTISYENSHFDDNEIPFMDAYMEAVSENFWTEPYMIESSYVTPSEEAICEHEYLSPMYDIELWSSV 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03989 249 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Trre11g03989 249 SMART sant 14 64 IPR001005 -
Trre11g03989 249 SMART sant 67 115 IPR001005 -
Trre11g03989 249 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Trre11g03989 249 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 210 - -
Trre11g03989 249 Gene3D - 70 148 - -
Trre11g03989 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Trre11g03989 249 FunFam MYB-related transcription factor 14 67 - -
Trre11g03989 249 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre11g03989 249 Pfam Myb-like DNA-binding domain 18 77 - -
Trre11g03989 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Trre11g03989 249 CDD SANT 70 113 IPR001005 -
Trre11g03989 249 Gene3D - 8 67 - -
Trre11g03989 249 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03989 Trre-Chr11 53112063 53113722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03989 4 120 MYB Transcription Factor Family AT2G31180 68.376 9.71e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre11g03989 Myb_DNA-bind_6 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03989 K09422 - mtr:11411430 328.176