Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03981 ATGAAGAAGAATTGTGAACTTTGCAAACTTCCTGCTAGAACTTTCTGTGAGTCAGACCAGGCTAGCTTATGCTGGGACTGCGATTCTAAGGTCCACAGTGCTAATTTTTTGGTTGAGAGACACACTAGAACTCTCCTCTGTCACGCTTGTCAGTCTCCGACGCCATGGAAAGCTTCCGGTGCTAGACTCGGTAACGCGCTTTCGTTGTGTGAAAGATGCGCCGGTGGAAGAAAAATTGATTCCGTACAACAAAATGAAGAGAGTGAAGGTGACAATGAGGATGAGGTTGAAACTGATTCAGATGAGGATTCTGATGATGAGGATGAGGATGATGATGATGATGATGTTGACGGTGATAATCAGGTTGTGCCTTGGTCTGCAACTGCTATTCCACCGGCGGCGTCGAGTTCTTCCAGTAGCGAAGAATCTGTTAGCAAGTGTAACGAGAACGATGAAGTTGTTTCGAAGTTAGTTACAGAAATTACCTTGAAACGACGTCGTGTGGATCATGATTTTCAGGTTTCGGATTCAAAAAACTGGAAAAATCAACGGAGAGAGGAGGTTGATTTGTTAGGGTGCGACGGAGAACCGTCGTCAAAGGCGGCGATACGGCGTTATTGTGACGGAGATGGAACGGAGCATTCTCAGCCACACGATTGA 660 0.4606 MKKNCELCKLPARTFCESDQASLCWDCDSKVHSANFLVERHTRTLLCHACQSPTPWKASGARLGNALSLCERCAGGRKIDSVQQNEESEGDNEDEVETDSDEDSDDEDEDDDDDDVDGDNQVVPWSATAIPPAASSSSSSEESVSKCNENDEVVSKLVTEITLKRRRVDHDFQVSDSKNWKNQRREEVDLLGCDGEPSSKAAIRRYCDGDGTEHSQPHD 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03981 219 SMART bboxneu5 1 46 IPR000315 GO:0008270
Trre11g03981 219 MobiDBLite consensus disorder prediction 130 144 - -
Trre11g03981 219 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Trre11g03981 219 MobiDBLite consensus disorder prediction 86 119 - -
Trre11g03981 219 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 181 - -
Trre11g03981 219 CDD Bbox1_BBX-like 5 46 - -
Trre11g03981 219 MobiDBLite consensus disorder prediction 81 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03981 Trre-Chr11 53034362 53035167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03981 1 133 C2C2-CO-like Transcription Factor Family AT4G27310 46.154 2.35e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre11g03981 zf-B_box 2.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03981 - - mtr:11417549 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03981 11 53034362 53035167 Trre11g03981 11 53034362 53035167 ECH