Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03978 ATGTTGTTGATTACTGCCATAGTAGAGGCGTGTATCACCAAGATTTGGAGGTTCCTTAATCCTCTTTTTTCCTATCTTGGTAGGGCTGAGTTCACATGTCCGCCTTGGTTTTCGCCTGAGGCAAAGAAACTGCTCAAGTCTATACTTAATCCGAACCCTCTAACGAAGATAAAGATTCCGGAAATCTTGGAAGATGAATGGGTCAAAAAAGGATACAAGCCGGCATCTTTTACCGAGGAAGACGGTATTAATGTAGATGATGTTGCTGCTACTTTCAATGATTCTAAGGAAAATCTCGTGACAGAGACAAAAGAAAAGCCAGTGTCGATGAATGCTTTTGAGCTTATTTCTAGATCACAAAGTTTCAATCTTGACAATTTGTTTGAGAAGCAAAAGATGAAGATGCAAGGTGATAAAAGTGGTAGGAAGGGTCAGCTTTCAGTGGCTACCGAGGTGTTCAATGATCTTACGGCATTAACATATTGA 486 0.4033 MLLITAIVEACITKIWRFLNPLFSYLGRAEFTCPPWFSPEAKKLLKSILNPNPLTKIKIPEILEDEWVKKGYKPASFTEEDGINVDDVAATFNDSKENLVTETKEKPVSMNAFELISRSQSFNLDNLFEKQKMKMQGDKSGRKGQLSVATEVFNDLTALTY 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03978 161 Gene3D Kinase associated domain 1, KA1 104 134 - -
Trre11g03978 161 ProSiteProfiles NAF domain profile. 105 129 IPR018451 GO:0007165
Trre11g03978 161 SUPERFAMILY Protein kinase-like (PK-like) 10 74 IPR011009 -
Trre11g03978 161 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 17 136 - -
Trre11g03978 161 Gene3D Transferase(Phosphotransferase) domain 1 9 75 - -
Trre11g03978 161 Pfam NAF domain 107 131 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03978 Trre-Chr11 53000741 53002618 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03978 19 153 CBL-interacting serine-threonine protein kinases AT1G01140 53.143 1.63e-53 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03978 - - gmx:100794136 211.46