Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03971 ATGATTTTCTTATTCATCTCTCTAAGGAGCGCTTCCATTTTCTCACCACTAACCCAATTACTCTCCACCTCTACTAAGTGTAGTGCTACTTGCATTGAATTGCATATGTTGGCGAAAGCTTGTGAAAAAGGGGATGGATCTAAGTCCCTGGGTAAGATACTGGCAAAATGGAAAGAATATAATGCCCAACTTGAAGCCTGCAGTGATGCAGACAAGCCTGTTCGAAAAGTTGCAGCTAAGGGATCGAAGAAAGGGTGTATGAAAGGTAAAGGAGGGCCTGAAAACTCGCGGTGTAATTATAGAGGTGTTAGGCAGAGGACTTGGGGGAAATGGGTTGCTGAAATCCGCGAGCCTAACCGAGGAAGTAGGCTATGGCTAGGTACTTTTCCAACTGCTATTGGTGCTGCTCTTGCCTATGATGAAGCAGCCAGGGCAATGTATGGTTCTTGTGCTCGTCTCAACTTTCCTAATGTTTCGGTTCCCAGATTCTCCGAGGAATCTTCTAATGATTCTCCAGATGGAAATCATTCTGGTTCCTCAATGACAGTATTGACAAATACCGAATCCCTGATAATACCAAATAACTCGGGGATAGGAGTTGATGACGAGACTGAAATGGAATCTGTTTCCTTATCCTTAAGTGTGAAGCAGGAGAATGAGGAAGGTGAATCAGTATAA 678 0.4381 MIFLFISLRSASIFSPLTQLLSTSTKCSATCIELHMLAKACEKGDGSKSLGKILAKWKEYNAQLEACSDADKPVRKVAAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIGAALAYDEAARAMYGSCARLNFPNVSVPRFSEESSNDSPDGNHSGSSMTVLTNTESLIIPNNSGIGVDDETEMESVSLSLSVKQENEEGESV 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03971 225 PRINTS Ethylene responsive element binding protein signature 100 111 IPR001471 GO:0003700|GO:0006355
Trre11g03971 225 PRINTS Ethylene responsive element binding protein signature 122 138 IPR001471 GO:0003700|GO:0006355
Trre11g03971 225 Pfam AP2 domain 98 148 IPR001471 GO:0003700|GO:0006355
Trre11g03971 225 Gene3D AP2/ERF domain 99 158 IPR036955 GO:0003700|GO:0006355
Trre11g03971 225 MobiDBLite consensus disorder prediction 162 181 - -
Trre11g03971 225 FunFam Ethylene-responsive transcription factor 2 98 157 - -
Trre11g03971 225 SMART rav1_2 99 162 IPR001471 GO:0003700|GO:0006355
Trre11g03971 225 ProSiteProfiles AP2/ERF domain profile. 99 156 IPR001471 GO:0003700|GO:0006355
Trre11g03971 225 SUPERFAMILY DNA-binding domain 99 156 IPR016177 GO:0003677
Trre11g03971 225 CDD AP2 98 158 IPR001471 GO:0003700|GO:0006355
Trre11g03971 225 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 41 200 - -
Trre11g03971 225 MobiDBLite consensus disorder prediction 186 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03971 Trre-Chr11 52965120 52968367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03971 28 159 AP2-EREBP Transcription Factor Family AT2G40340 55.882 1.19e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre11g03971 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03971 - K09286 tpra:123899058 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03971 11 52965120 52968367 Trre7g01266 7 9026682 9027269 PCT