Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03965 ATGCACGTCCACATGAAAGCTGAGTTAAAAGCAACATCAATTTCCTTTCAAAACCAAACACTCTTCAACACACATCAAAACACTCCTCCTCTTCCTGAACCAGAAGCACTTAAAGGTTGTCTAGGAAGCTTAGATGGAGCATGTATTGAAAAGCTCTTACTTCATTGTGCAAGTGCTTTGGAAAACAATGATATAACCTTAGCTCAACAAGTTATGTGGGTCTTAAACAACGTTGCTTCGCCATTAGGCGATACGAACCAAAGACTCACTTCATGGTTTCTTAGAGCATTAATCTCTAGAGCTTCAAGAATTTGTCCTGTTTCAATGAATTTCAAAGGAAGTAACATAATTCAAAGAAGATTGATGTCGGTTACCGAACTCGCCGGGTATGTTGATTTAATTCCTTGGCATAGGTTTGGATTTTGTGCTTCAAACAATGAAATTTTCAAAGCAATTAAAGGATTTAAAAGGGTACATATTTTAGATTTTAGCATAACACCTTGTATGCAATGGCCTACTTTTATAGATTCTTTGGCTAAATTACAAGAAGGTCCTCCTTCACTTAGAATCACAGTTCCATTTTTTAGGCCAATGGTTCCACCTTTGGTTAATATCTCAATACATGAAGTTGGTCAACGTTTAGGTAATTTTGCAAAGTTTAAGGATGTCCCTTTTGAATTTAATGTTATTGGAGATAATGTTTCATTGACTTCTGAAGAATTGAGCAATATTGAATCCACAAGTTTTCATTTTGAATCAATGTTAAGTCTCTTGAATCCTAACATGTTAAATCTTAGGGAAGATGAAGCTTTGGTTATAAATTGTCAAAATTGGCTACGATATTTGTCTGACGATAGAAAAGGTCAAAATATATCGGTTCGCGACGCTTTTATAAATTTAGTTAAAGGACTTAACCCTCAAATTGTTCTTTTGGTTGATGAGGATTGTGATCTTAGTTCATCAAGTTTAACATCAAGAATTACAGCTTCTTTTAACCATTTATGGATACCCTTTGATGCATTGGACACTTTTTTACCTAAAGATAGTTGTCAAAGGATAGAGTTTGAATCTGACATAGGACAAAAAATTGAGAACATTATAAGCTATGAAGGGAATCAAAGAATTGAGAGATTGGAATCAGGGATGCAAATGTCACAAAGAATGAAAAATGCTGGTTACTTTAGTGTTCCATTTTGTGATGAAACTATTTTGGAAGTTAAGGGTTTGCTTGATGAACATGCTAGTGGGTGGGGAATGAAAAAAGATGAAAGCATGTTGGTTCTTACATGGAAAGGAAATAGTTGTGTGTTCGCGACCGCTTGGGTCCCTAATGAAATTAGTGATCATATCGGTTTGCATGTATCTGTATCTTAA 1374 0.3501 MHVHMKAELKATSISFQNQTLFNTHQNTPPLPEPEALKGCLGSLDGACIEKLLLHCASALENNDITLAQQVMWVLNNVASPLGDTNQRLTSWFLRALISRASRICPVSMNFKGSNIIQRRLMSVTELAGYVDLIPWHRFGFCASNNEIFKAIKGFKRVHILDFSITPCMQWPTFIDSLAKLQEGPPSLRITVPFFRPMVPPLVNISIHEVGQRLGNFAKFKDVPFEFNVIGDNVSLTSEELSNIESTSFHFESMLSLLNPNMLNLREDEALVINCQNWLRYLSDDRKGQNISVRDAFINLVKGLNPQIVLLVDEDCDLSSSSLTSRITASFNHLWIPFDALDTFLPKDSCQRIEFESDIGQKIENIISYEGNQRIERLESGMQMSQRMKNAGYFSVPFCDETILEVKGLLDEHASGWGMKKDESMLVLTWKGNSCVFATAWVPNEISDHIGLHVSVS 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03965 457 Pfam GRAS domain family 50 441 IPR005202 -
Trre11g03965 457 ProSiteProfiles GRAS family profile. 40 442 IPR005202 -
Trre11g03965 457 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 49 431 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03965 Trre-Chr11 52877440 52878813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03965 27 443 GRAS Transcription Factor Family AT3G49950 43.560 3.87e-116 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre11g03965 GRAS 3.5e-84 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03965 - - gmx:100805056 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03965 11 52877440 52878813 Trre11g03965 11 52877440 52878813 ECH