Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03963 ATGGGCGATGGAGGTGTCGCATGCATGCCTTTGCAGTATATTATGGAGAAGTTATCGAGTTCAGAGAAAACGCATTGCGGAGGCAATAACGGGAATGGCTTCAACTCCAAGTTGCTTAAGTTTTCTGATAGTGAAAGGAAGAATATGAAGTCAAGGAAGAGTGAATTAGGGTTGGATAGAGTGAGTAAGAGGAGTAGTGGTGATTTTGAGAATGGTGAAATGATATGTGGTGATAAGGTGCTGAAGGAAGAAGTGGAAGAAGGTGAATTGGTTACTACTAATTTGAAGTGGCCTAGAAGTGAAATTGAAGTTGAAAATGGAGAGTTTTTTCCGGAGATGAATTCGATGCCGAGACGAAGTGAGATTGAGAATGGGGAGATTTTGGGTGATAGATGGAACTCAAGGGAGTTTGAGAAGGGAGAGATTCATTCTGGGAAGTGGAGAAGAGATGATGTGGAAAGAGGGGAGATAGTTCCTGAAAAGGGTAAGAGAGGAGAAAATCAATATAGACCGTGGAGAGGTATGAATCATGATTTTGAGAAGGGAGAATTTATTCCAGATAGATGGTATAAGGGAGAGATGGGGAAGAATGATTATGGTAACAGCAGTAACCGAAGACATTATTCGAGTAAGGACAAAGGGTGGAAATTTCAACGCGAACGTACTCCACCACCTTCTTGGAGATATACAGGTGAAGATTCTTTTAGGAAGAAAGAGTTCATTAATAGAAGCGGGAATCAGCATGCAAAAAATTCTCCCAGGTGGGAGAATGCACAGAAGAGGAATGTAAGGATCAGTTCAAAGATTGTTGATGACGAGAAAAATGCTTACAGCAATGGTAAGGATCATACACGAGATTACACTTCTTCTGGAAGTCGCTTGAAGAGGCTCAGTAATGATTTTGACAGCCATGAGCGCAAGCATTCTGCAGATTTTACAAGTTTAAAAAGTCGAAGGCTTTCTGATGAAAGCTATCGCTGTGGTTATTCAGAGAACTATTCTCGTCGCCCTGTGGAACAGTCTTATAGAAATAATAATTCTACTAGACTATCTGCTGAAAAATATTCTTCTAGAAATCATGAACCTTCTTTGTCTGCCAGACCAGCTTATGACAGGCATGAACGCAGTCCTGTTCATTCTGAGTGGTCCCCACGTGACCGAAGCAGGTATTATGATCATAGAGACCGCACTCCAGTGCGCAGATCACCTTTTGGTCGTGAGAGATCTCCATATAGCCGGGAGAAATCCCCCCATGGCCGGGAGAGATCCCCATATATGATGAGCTGGGACAGAAGTCGACAGCATGACCATAAGTTGAAAAGTCCTGCGCACACCGAGCAGTCACCCCAAGATCAAGGTTGGTGTCATGATCGCAGGGATTTGACTCCAAATTTAGTAGAACGATCCCCCCTTGATCGAACTAGGGAAGATGTTCAAGAAGAAACAAGTTGCAAAACCTCATCAAGTGAAAAGCATAGCTCCCCAAATAGTTGTAAGAGTGATGAAGATAAGCACATTCAAACGGAGTCAAGTTGTTCAGTTACAGAATCTCAAGGTGAAAGAAACATTCGAAACACCAATGAGTCAATTGAGAAAGATATTAGTAGTAGTCAACCCGTTGACGTTGAGGAACAGCAGTCCTGTAGCCCAACTGTCAACCACAAAGAATCTCCCCACTGTGAGCCACAACCACCTCCTGATGAGCTGCTTTCAATGGAAGAAGATATGGACATTTGTGATACCCCTCCTCATGTCCCTGTGGTGACAGATTTGTCATCAGGGAAATGGTTTTACCTTGATTATGAAGGTGTAGAAAATGGGCCTGCTAAATTGTGTGACATCAAGGTCCTTGTTGATGAAGGGGTGCTAATGTCAGATCACTTTATCAAGCACTTGGATAGTGACAGATGGTTAACAGTTGAAAATGCAGTGTCGCCATTGGTTGCTCATAGTTTTCCTTCCATTGTGTCAGATACAATAACTCAGCTTGTAAATCCTCCAGAAGCTTCTGGTAATCTTTTGGCCGATACTGCAGATATTCAATCTGGTCCTGCGAATCATCCGGAAATGCTGGCCCCCACGCCGTGGCCACGCATACACCCTAATGAGAGTGTGCTTACGTCTGAACGATTGGACAACTTCTACATTGATGAAAGAGTTCGAAATCTGTTGGAGGGTTATGATGTCATTCCTGGGATGGAACTTGAGGCAGTAAAAGAAGCTTTGCAAATGAAATTTGAATATGTGAAAGAGGATGGATTAGGAGACTGTGAAGGTTTTCCTTGGCATGTTTCCGGCCATAGGAAAGATTGTGATTCAAGCACTGATCTAGCAACAAGAGATTCTGAATCCCAGACAAGTATATCTTTTGACAACAAGGATAATGAACTTGGCTTTGGCATTCCTAATGATTGGTTTTCCACTCGTTGGTCATGCAAAGGTGGTGACTGGAAGAGGAACGATGATGCCCAAGATAGACCTTCTAGGAAAAAACTTGTTCTAAATAATGGTTTTCCATTGTGCCAAATGCCAAAGTCTGGATGTGAAGATCCTCGATGGCCTGAAAAAGATGACTTGTATTTTCCTTCTCAAAACAGGAGGCTTGATCTCCCTTTGTGGGCTGTTGGTGCCGATGAGTGGGTTGATAGCAATGCTGCAAGTAGGTCAGTTCAAAGTAAGCCTCCTTTTGTCAAAGGAGTGAAAGGTAATGTTCTTTCGGTGGTAAGAATAAATGCATGCGTTGTCAATGACCAGGGATTGTTGCTCTCTGAGTCACGCCACCAGACCCGAAGCAAGGATAGACAGCATCCAAGGTCAACTCGGCCATTCACTTCAACCAGCGATAGTAGGAGATCATCAACCGAAGAAGATTCTCAGTCAAAATCAGTTAGTGATCAAGGTTCTTACCAAAGCATGGAGTTCATTAGTGTCCATAAAGACCATCTCTGTACTATCCAGGAGTTGCAGCTACATTTGGGTGACTGGTATTACATTGATGGTTCTGGGCGTGAGAGAGGGCCTTCATCATTTTCAGAGCTACAATATTTAGCAGATCAAGGAATTATAAAAAGGCATAGCAGTGTGTTTAGGAAACGTGATAAACTTTGGGTTCCTATTGCCTCTGCCACAGAAACTTCAGATGTCTGCCTCACGAGCAACCAAAAAAGCAGTTCAACATTGGGTGCATGCTCTGATCATCCATCAAAGCAAACTCAAGGCGTTTTATACGGTGAATCTTACACAAGTTCAAGTTTGTTTAACATGATACACCCTCAATTTGTTGGTTTTACTCGTGGGAGGTTACATGAACTGGTTATGAAATCATACAAGAGCCGGGAGTTTGCCGCTGCTATAAATGAGGTTTTAGATCCCTGGATCAATGCAAGACAACCAAAGAAAGATATTGAGAAACAGATATATTGGAAATCAGAAGGCGACACACGAGCTGCCAAAAGAGCCCGTATGCTGGTTGATGATAGTGAAGAAGACAGTGGTTTGGAAGATGATGTTACCATTGACAAGAATGAGCCCACTTTTGAGGATCTATTTGGTGATGCTACTTTTCCCGAAGAAGAAATTGGTATCGCTGATACTAAAGTTGGAAGCTGGGGCTTATTGGATGGTCCAGTTTTGGCACGGATTTTCCATTTTTTGAGATCTGACTTTAAGTCCCTTGTATTTGCATCAATGACCTGCAAGCATTGGAGTGCTGCTGTAAGGTTTTACAAGGAAGTCTCAATACAGGTCAATTTGTCATCCTTAGGGCATTCTTGCACTGATACTGTGTTGTGGAACATTATGAATGCTTACGAGAAAGCCAAGATCAATTCTATAATTCTAATGGGCTGTAACAATATTACGGCTGACATGCTTGAGAAAATTCTTCTTTCATTTCCCGGTTTATGTACCATAGACATCAGAGGATGCAGCCAGTTTGGTGAGCTAACTCCTAAATTTACCAATGTGAAATGGATCAAGAGCAGAAGTTCACGCAAGGACAGAATTGCAGAGGAGCCTCATAAAATTAGAAGCCTTAAACATATTACAGAGCAAGCTTCATCTGCTTCCAAATCCAGCAATTTAGGAATAGATGATTTTGGTCAGTTGAAGGAGTATTTTGATAGTGTGGATAAGAGAGACTCGGCAAAGCAATTATTTCGTCAAAACCTATACAAACGGTCCAAACTCTATGATGCTAGAAGGTCCTCTTCCATTCTATCTAGGGATGCTCGTACTAGACGTTGGGCAATTAAGAAGTCTGAAAGCGGTTTTAAGAAGATGGAGGAATTCCTTGCTTCAAGACTAAAGGAAATCATGAAGACAAACTCCTGTGACTTCTTTGTGCCCAAGGTTGCAGAAATCGAGGCCAAAATGAAAAGTGGTTATTACAGTAGCCATGGATTGAGCTCTGTCAAAGAGGACATACGTAGAATGTGCCGTGATGCAATGAAAGTCAAAAATCGGAATGATGCCAGTGACATGAATCACCTTATCACATTATTTACTCAACTGGGAACACAGTTGGAAACAAGTTCTAAGAATGTGCATGGCAGAGATGTCCTACTGAAGTCATGGGACAATGACTTGCCACCAATGTTAGGCTCTACTTCCTCAAAGTATAAGAAAGGTAGATTAGTGAATGAAAGGAAGTACAGGAGTAATGGAAAACATAATGTTTTGGATAATGTAGAGTATACCTCTGATAGAGAAATTAGGAGGCGCTTATCAAAGTTGAATAAGAAATCTGTGGGCTCAGAGACTGAAACATCTGATGATCTTGATACTTTTGAAGATGGAAAGAGTGACAGTGATACTACGACTGAGTCTGAAAGTGACCATGAAGTACGTTCACAAGTTATGGTTAAGGAGCCAAGAGGGGGTGGATGCTTCTCACCTGAGGAAGAGTTGGATTTTATAACTGATGACCGAGAGTGGGGTGCTCGCATGACGAAAGCAAGCCTGGTTCCTCCAGTTACCAGGAAATATGAAGTCATTGATCATTATTGCATTGTAGCTGATGAGGAGGAGGTGCAGAGGAAGATGCGGGTTTCATTACCAGATGATTATGCAGAGAAGCTGAGTGCACAAAAGAATGGCACAGAGGAGTCAGATATGGAACTTCCCGAAGTCAAAAGTTTCAAACCTAGGAAGCAGCTTGGAAATGAGGTTATTGAGCAAGAAGTTTATGGAATTGATCCTTACACACACAACCTTTTGCTTGATTCTATGCCAGAGGAGTTAGATTGGTCTCTGCAGGAGAAGCATTTGTTTATAGAAGACACGCTCCTTCGAACATTGAATACGCATGTTAGGAACTCTACTGGAACTGGAAATACTCCAATGAGCTACCCTTTGCAGCCTGTTATTGACGATATTAAAAGACGTGCTGAAGAAGGTTGCGATACAAGAATGATTAAAATGTGTCAAGGTATTCTAAAGGCCATAGATAGCCGTCCAGATGACAAATATGTAGCTTATAGAAAGGGGCTTGGTGTTGTTTGCAACAAGGAAGAAGGCTTCTCCCAAGATGATTTTGTTGTGGAGTTTCTGGGAGAGGTTTATCCTGTGTGGAAGTGGTTTGAGAAACAAGATGGGATTCGATCTCTGCAGAAAGATAGTACAGATCCAGCACCAGAATTCTACAACATCTACCTTGAGAGACCAAAGGGCGATGGTGATGGGTATGACTTAGTTGTCGTTGATGCCATGCACAAGGCTAATTACGCCAGTCGAATATGTCATTCTTGCCGACCCAATTGTGAAGCCAAAGTTACTGCTGTTGATGGTCAGTATCAAATTGGTATTTATAGTGTTCGTAAAATTCAACATGGTGAGGAGATCACTTTTGATTACAATTCTGTTACTGAGAGCAAGGAGGAGTATGAAGCATCAGTTTGTCTGTGTGGAAGCCAAGTATGCCGTGGGAGCTATCTGAATCTGACTGGTGAAGGGGCTTTTCAAAAGGTTCTGAAAGACTCGCATGGAATTCTTGATCGGCATTATTTGATGTTAGAAGCTTGTGAATCAAACTCTGTGTCTGAAGAGGACTATAATGACCTTGGAAGAGCTGGTTTAGGAAGTTGCTTGCTTGGGGGCTTGCCTGATTGGCTTGTTGCCTATGCAGCTCGCCTTGTGAGGTTCATCAATTTTGAAAGAACTAAACTTCCCGAAGAAATTCTGAAGCATAATCTGGACGAAAAGAGAAAATATTTTTCAGATGTATGTCTTGAAGTTGAAAGGAGTGATGCTGAGGTTCAGGCGGAGGGAGTGTACAACCAAAGGCTTCAGAATCTTGCTGTCACTCTGGATAAGGTAAGGTATGTTATGAGATGTATTTTTGGTGATCCGGGGAAAGCACCGCCTCCTCTTGAGAAGCTCAGTCCTGAAGAAGTTGTTTCGTCTCTCTGGAAAGGAGAGGGCTCATTCGTTGAGGAACTTCTTCAGTGCATGGCTGCTTATGTAGAAGAAGGGATCTTGAATGATCTCAGATCCAAAGTTCATGCTCGTGATCCTTCAAGTTCGGCAGATATTCAAAAAGAGCTTCGGAAATCTCTATTATGGTTGAGGGATGAGATTCGAAGTCTTTCTTGTACATATAAATGTCGGCATGATGCTGCTGCTGACTTACTCCATATTTACGCTTATACCAAGCACTTCTTTAGAATACAGGAATATCAAACCATTACTTCACCGCCTGTCCATATTAGTCCACTTGACTTAGGTCCCAAGTATACTAACAAGTTGGGAGCAGAGATTCAGGAGTACCAAAAGGTATATGGTGAAAATTATTGTTTAGGGCAGCTGATTTTTTGGCATAATCAGAGTAATTCAGATCCAGATCAGACCTTGGTTAGAGCAAGCAGGGGGTGTTTGTCTTTACCAGACATCGGCTCCTTTTATGCCAAGGCTCAGAACCCATCACAGAATCGTGTTTATGGTCCAAGGACTGTCAGATCTATGCTGGCAAGAATGGAGAAGCAGCCGCAGAGATCTTGGCCCAAAGACCAGATATGGTTGTTTAGAAGTTCTCCGAAATTCTTTGGTAGCCCAATGTTAGATGCAGTAATAAATAACTCTACACTGGACAGGGAGATGGTTCAATGGTTGAAGCACAGACCTGAGGCCATATGGGACCGTTAA 7140 0.4234 MGDGGVACMPLQYIMEKLSSSEKTHCGGNNGNGFNSKLLKFSDSERKNMKSRKSELGLDRVSKRSSGDFENGEMICGDKVLKEEVEEGELVTTNLKWPRSEIEVENGEFFPEMNSMPRRSEIENGEILGDRWNSREFEKGEIHSGKWRRDDVERGEIVPEKGKRGENQYRPWRGMNHDFEKGEFIPDRWYKGEMGKNDYGNSSNRRHYSSKDKGWKFQRERTPPPSWRYTGEDSFRKKEFINRSGNQHAKNSPRWENAQKRNVRISSKIVDDEKNAYSNGKDHTRDYTSSGSRLKRLSNDFDSHERKHSADFTSLKSRRLSDESYRCGYSENYSRRPVEQSYRNNNSTRLSAEKYSSRNHEPSLSARPAYDRHERSPVHSEWSPRDRSRYYDHRDRTPVRRSPFGRERSPYSREKSPHGRERSPYMMSWDRSRQHDHKLKSPAHTEQSPQDQGWCHDRRDLTPNLVERSPLDRTREDVQEETSCKTSSSEKHSSPNSCKSDEDKHIQTESSCSVTESQGERNIRNTNESIEKDISSSQPVDVEEQQSCSPTVNHKESPHCEPQPPPDELLSMEEDMDICDTPPHVPVVTDLSSGKWFYLDYEGVENGPAKLCDIKVLVDEGVLMSDHFIKHLDSDRWLTVENAVSPLVAHSFPSIVSDTITQLVNPPEASGNLLADTADIQSGPANHPEMLAPTPWPRIHPNESVLTSERLDNFYIDERVRNLLEGYDVIPGMELEAVKEALQMKFEYVKEDGLGDCEGFPWHVSGHRKDCDSSTDLATRDSESQTSISFDNKDNELGFGIPNDWFSTRWSCKGGDWKRNDDAQDRPSRKKLVLNNGFPLCQMPKSGCEDPRWPEKDDLYFPSQNRRLDLPLWAVGADEWVDSNAASRSVQSKPPFVKGVKGNVLSVVRINACVVNDQGLLLSESRHQTRSKDRQHPRSTRPFTSTSDSRRSSTEEDSQSKSVSDQGSYQSMEFISVHKDHLCTIQELQLHLGDWYYIDGSGRERGPSSFSELQYLADQGIIKRHSSVFRKRDKLWVPIASATETSDVCLTSNQKSSSTLGACSDHPSKQTQGVLYGESYTSSSLFNMIHPQFVGFTRGRLHELVMKSYKSREFAAAINEVLDPWINARQPKKDIEKQIYWKSEGDTRAAKRARMLVDDSEEDSGLEDDVTIDKNEPTFEDLFGDATFPEEEIGIADTKVGSWGLLDGPVLARIFHFLRSDFKSLVFASMTCKHWSAAVRFYKEVSIQVNLSSLGHSCTDTVLWNIMNAYEKAKINSIILMGCNNITADMLEKILLSFPGLCTIDIRGCSQFGELTPKFTNVKWIKSRSSRKDRIAEEPHKIRSLKHITEQASSASKSSNLGIDDFGQLKEYFDSVDKRDSAKQLFRQNLYKRSKLYDARRSSSILSRDARTRRWAIKKSESGFKKMEEFLASRLKEIMKTNSCDFFVPKVAEIEAKMKSGYYSSHGLSSVKEDIRRMCRDAMKVKNRNDASDMNHLITLFTQLGTQLETSSKNVHGRDVLLKSWDNDLPPMLGSTSSKYKKGRLVNERKYRSNGKHNVLDNVEYTSDREIRRRLSKLNKKSVGSETETSDDLDTFEDGKSDSDTTTESESDHEVRSQVMVKEPRGGGCFSPEEELDFITDDREWGARMTKASLVPPVTRKYEVIDHYCIVADEEEVQRKMRVSLPDDYAEKLSAQKNGTEESDMELPEVKSFKPRKQLGNEVIEQEVYGIDPYTHNLLLDSMPEELDWSLQEKHLFIEDTLLRTLNTHVRNSTGTGNTPMSYPLQPVIDDIKRRAEEGCDTRMIKMCQGILKAIDSRPDDKYVAYRKGLGVVCNKEEGFSQDDFVVEFLGEVYPVWKWFEKQDGIRSLQKDSTDPAPEFYNIYLERPKGDGDGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVDGQYQIGIYSVRKIQHGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLTGEGAFQKVLKDSHGILDRHYLMLEACESNSVSEEDYNDLGRAGLGSCLLGGLPDWLVAYAARLVRFINFERTKLPEEILKHNLDEKRKYFSDVCLEVERSDAEVQAEGVYNQRLQNLAVTLDKVRYVMRCIFGDPGKAPPPLEKLSPEEVVSSLWKGEGSFVEELLQCMAAYVEEGILNDLRSKVHARDPSSSADIQKELRKSLLWLRDEIRSLSCTYKCRHDAAADLLHIYAYTKHFFRIQEYQTITSPPVHISPLDLGPKYTNKLGAEIQEYQKVYGENYCLGQLIFWHNQSNSDPDQTLVRASRGCLSLPDIGSFYAKAQNPSQNRVYGPRTVRSMLARMEKQPQRSWPKDQIWLFRSSPKFFGSPMLDAVINNSTLDREMVQWLKHRPEAIWDR 2379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03963 2379 CDD F-box_SF 1210 1240 - -
Trre11g03963 2379 MobiDBLite consensus disorder prediction 365 444 - -
Trre11g03963 2379 MobiDBLite consensus disorder prediction 190 569 - -
Trre11g03963 2379 CDD SET_SETD2-like 1826 1974 - -
Trre11g03963 2379 Gene3D SET domain 1816 1983 IPR046341 -
Trre11g03963 2379 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR3 408 2378 - -
Trre11g03963 2379 Pfam SET domain 1885 1952 IPR001214 GO:0005515
Trre11g03963 2379 MobiDBLite consensus disorder prediction 334 363 - -
Trre11g03963 2379 ProSiteProfiles SET domain profile. 1813 1952 IPR001214 GO:0005515
Trre11g03963 2379 MobiDBLite consensus disorder prediction 297 325 - -
Trre11g03963 2379 MobiDBLite consensus disorder prediction 1580 1620 - -
Trre11g03963 2379 MobiDBLite consensus disorder prediction 925 965 - -
Trre11g03963 2379 MobiDBLite consensus disorder prediction 451 487 - -
Trre11g03963 2379 MobiDBLite consensus disorder prediction 45 64 - -
Trre11g03963 2379 MobiDBLite consensus disorder prediction 771 791 - -
Trre11g03963 2379 MobiDBLite consensus disorder prediction 495 509 - -
Trre11g03963 2379 Pfam Protein SET DOMAIN GROUP 2 C-terminal 1963 2378 IPR045606 -
Trre11g03963 2379 MobiDBLite consensus disorder prediction 245 264 - -
Trre11g03963 2379 MobiDBLite consensus disorder prediction 205 219 - -
Trre11g03963 2379 MobiDBLite consensus disorder prediction 510 556 - -
Trre11g03963 2379 MobiDBLite consensus disorder prediction 142 177 - -
Trre11g03963 2379 SMART set_7 1818 1958 IPR001214 GO:0005515
Trre11g03963 2379 SUPERFAMILY SET domain 1827 1975 IPR046341 -
Trre11g03963 2379 MobiDBLite consensus disorder prediction 1580 1633 - -
Trre11g03963 2379 MobiDBLite consensus disorder prediction 265 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03963 Trre-Chr11 52849438 52861682 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre11g03963 SET 2.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03963 K22748 - gmx:100776205 3725.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03963 11 52849438 52861682 Trre11g03963 11 52849438 52861682 ECH