Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03961 ATGGATCCAAATTTCCACCCTATGTTTTCCGGTGACAGTTCCGACCCAATGTTTTCTAACTTGAGCCTCCAATCACTTCTCAGTTACAACAACAACTACCCTTCTTTCTTCTCCGACCAAACTCCTTCACTCCCTAACCTCCCTGAAACCATCACCGACCAAATTCCTCAAAACCCATTAAACCTTCTTCCTCCATTAGATCAATATCTTCCTCCAATTCAACAACAACAACCCTTCAACTTCTTCCCTCAACATTATCAACCACCACCACCACCACCCTTTGAATCCTTCCACCGTCTCCCTCAACTCATTACAAAACAACCACCACCACCAAAACAGCAGCAACAACTTCACTCATCAGTTCGTGGAAAACCATCCTCATTGATTCCTCAAAGCAAGTTAGCAAGACAGAGAAGACAAAAACTAAGCGAGAAAACTCGTTGTTTACAGAAACTAATGCCATGGGATAAGAAAATGGATCAAGCTACACTTTTAGAAGAAGCTTATAAATATGTCAAATTCTTACAAGCACAACACTCTGTTCTTCAATCAATGCCATCACACTCAATCACAAACAACAGCTACGGCGGCGGCGGAAACAGCGGCGGTGGTGTTTTTGGTGACTTAGAAATGCTGAACAGAAACCAAGCTTTACAAGTTCTTGTGAACTCACCAGTTGCACAAACAAAACTTTGTTCACAAGGTTACTGTGTTTTCTCCATGGAACAATTTACTCTGCTAAGAAAGTTATCAGAAAGAAGACAATTGCAGCAGCAGATGAATTTGGCTTTATCTGATCATGGTTCTTCCAAGACTTTCTTTCACTGA 828 0.4143 MDPNFHPMFSGDSSDPMFSNLSLQSLLSYNNNYPSFFSDQTPSLPNLPETITDQIPQNPLNLLPPLDQYLPPIQQQQPFNFFPQHYQPPPPPPFESFHRLPQLITKQPPPPKQQQQLHSSVRGKPSSLIPQSKLARQRRQKLSEKTRCLQKLMPWDKKMDQATLLEEAYKYVKFLQAQHSVLQSMPSHSITNNSYGGGGNSGGGVFGDLEMLNRNQALQVLVNSPVAQTKLCSQGYCVFSMEQFTLLRKLSERRQLQQQMNLALSDHGSSKTFFH 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03961 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Trre11g03961 275 MobiDBLite consensus disorder prediction 103 140 - -
Trre11g03961 275 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 69 251 IPR045843 GO:0003700|GO:0006355
Trre11g03961 275 Gene3D - 130 193 IPR036638 GO:0046983
Trre11g03961 275 Pfam Helix-loop-helix DNA-binding domain 134 176 IPR011598 GO:0046983
Trre11g03961 275 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 184 IPR036638 GO:0046983
Trre11g03961 275 SMART finulus 132 181 IPR011598 GO:0046983
Trre11g03961 275 MobiDBLite consensus disorder prediction 40 60 - -
Trre11g03961 275 MobiDBLite consensus disorder prediction 109 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03961 Trre-Chr11 52838937 52839764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03961 138 251 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 46.491 1.83e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre11g03961 HLH 0.00027 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03961 - - psat:127083335 246.128