Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03958 ATGACAAAACCTGGTTATCTGCTTGTTTATGTCATTCTTCTTTGCGCTTTAGCCAATGGAGGTTCAGAGGGTAAGAGGTGGAAACATCAAGACTTTTATAGATATTATCTTCGAAATAAGGTAGAGCAGGTGTGGAAACATTGTAGGAATGAAATGATAGAAAGGAATTATGATATCGAAGAATTTGACTTGCATTTATTGGATGAGATGGGAGAAAAGAGATCTAAATTTCTACCTCTCCATGTGAAACAACACTTTCTAGATTGCATATTAAACAGAAATTTTCCTATTCCTGTTTCCAAACAAGAGGGATATTTGTTGAAGAAGCATTATGAGTCATTTTTTGGTTTATCAGATCGACATCGATATTTACTCTCAGAGTCACAACATAATCAGACACCACCAAGTCCTGATTCTGTTCCATCATCTGGATCATCACCGAAGCCAAAAAGTCATGTTGCAGCACAAGTCACTTTGACACCTCCAACTCCTGGACTTCCATACGATGATTTTCTGCTCACTCCACCATTTGCACCACCGCCTCCTCATCATGATGACAAGCAACAAAAATCAATTATTATTGCTGTAGTTGCATCAGCAATTATAATCTTAATAGGTTTGTTCCTATGCTGTCGCGAGGTGAAGAAGAGCAAAATAAGTGAGAAAGATGACAGGCCTTTACTCATATTAAGCTCGAGTGACTTCTCTGGTGGTAGTTCACAAAAGTCTATTGCTTTTGAAAATTCTGATATGAGAGAACATGGTATTAACTATGGAATGAATCCTTCTACTGTTGGGAATTTGTCCATTAAGAATGAAGTCAACAACGCTTCACTGAATGAGATAACATCATCAGATGACAAGGGACAAGTACCGGTGTCTCAATTAAAACATCCTCCTGGAAGATCAGTCCCTGATGCTCCACCACCACCACCAACACCGCCACCTCCACCACCTGCTCTTGCACCTCGGCCTCCACCTCCTCCAAAAATATCTCAGGCTCCACCTGCTCCTCCCAAACCAATGGCAGGTAGAAACCAAAAATCACCTCTAGGACCACATCGTACTAGTGAGGGCGATGATGACTCCGATGCTCCAAAACCGAAATTAAAGCCATTTTTCTGGGATAAGGTTTCAGCAAATCCTGATCAAGCTATGGTCTGGCATGAGATCAGAGCCGGGTCATTCCAGTTCAGTGAAGAGAAGATAGAGTCTTTATTTGGCTGCACCAACCAGAACAGAAATGAAAGAAGAAAAGATGCTCCTTCTTTAGAACCTTCGGTCCAGTACATTAAGATTATTGAACCCAAGAAAGCACAGAATTTATCGATTCTTTTACGTGCTCTGAATGTGAGCACGAAAGAAGTTATTGACGCCCTTAATGAAGGTGATGAGATTCCTGTTGAGCTCATTCAAACAGTATTGAAGATGTGGCCAACAATGGATGAGGAATCAAAGCTAAAGTTATTCACAGGCGACGTTTCTCAACTTGGCCCTGCAGAGAGATTTCTCAAGGCCTTGGTTGATATTCCACTAGCTTTCAAACGTCTTGAGTCTCTACTGTTCATGTTTACACTTCCGGAAGAGGCTTCAAGCATTAAGGAATGCTTTACAACATTAGAGGTTTGTTGCAATGAACTAAGAAAAAGCAGGCTCTTCCAAAAGCTATTAGAAGCAGTTCTAAAGACAGGAAACCGATTAAACGATGGCACCTATCGTGGTGGGGCTCAAGCATTTAAGCTTGACACACTTTTGAAACTTGCAGATGTAAAAGGAACAGACGGCAAGACCACGCTGTTACACTTTGTGGTTCAAGAGATCATACGTTCCGAGGGCATAAGAGCTGTTAGAACAGCGAAAGAAAGCCAAAGCCATTCTAGTATGAAAACCGAGGATTTGATTGATGATTCAAATGGGAAACCAGAAGAGCACTATCGCAGCCTTGGCCTTCAAGTAGTTTCAGGTCTAAGCACCGAACTAGAAGATGTTAAAAAGGCAGCATTAATAGACGGTGATGCTGTAACGGCTGCAGTGTTGAAACTTGATCATAGATTGGCAAAAACCGAAGAACTGTTGAATACTGATCTGAAGAATCTAGAAGAAGAGAGCGAGTTTCAACATTCCCTTTCAGATTTTGTGGAGAGTGCAAAAGAAGAAGTGAAATGGTTGACAGTAGAAGAGAAGAGGATAATGGCTGAGGTTAAGAACACTGCAGATTATTTTCATGGAAACGCCGGAAAAGATGAAGGGTTGCGTTTGTTTGTGATTGTACGCGATTTCTTGTTAATGTTGGACAAGGTGTGCAAAGAGGTTAAAGTATCAACCAAGACGGTAGCAATTAAGGATCCTTCTTCATGGAAGAAAGAGCCTTCTTCAATGTCATCGTCTCCGGATACTCATCAACCATCACCTTCTGATATGCATAGGAGGCTCTTTCCAGCCATAGCAGAGAGGAGAATACATGACTCTAGTTCCGACGACGATGATGACGATAATGAGAGATTACCAACGTAG 2514 0.4137 MTKPGYLLVYVILLCALANGGSEGKRWKHQDFYRYYLRNKVEQVWKHCRNEMIERNYDIEEFDLHLLDEMGEKRSKFLPLHVKQHFLDCILNRNFPIPVSKQEGYLLKKHYESFFGLSDRHRYLLSESQHNQTPPSPDSVPSSGSSPKPKSHVAAQVTLTPPTPGLPYDDFLLTPPFAPPPPHHDDKQQKSIIIAVVASAIIILIGLFLCCREVKKSKISEKDDRPLLILSSSDFSGGSSQKSIAFENSDMREHGINYGMNPSTVGNLSIKNEVNNASLNEITSSDDKGQVPVSQLKHPPGRSVPDAPPPPPTPPPPPPALAPRPPPPPKISQAPPAPPKPMAGRNQKSPLGPHRTSEGDDDSDAPKPKLKPFFWDKVSANPDQAMVWHEIRAGSFQFSEEKIESLFGCTNQNRNERRKDAPSLEPSVQYIKIIEPKKAQNLSILLRALNVSTKEVIDALNEGDEIPVELIQTVLKMWPTMDEESKLKLFTGDVSQLGPAERFLKALVDIPLAFKRLESLLFMFTLPEEASSIKECFTTLEVCCNELRKSRLFQKLLEAVLKTGNRLNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTAKESQSHSSMKTEDLIDDSNGKPEEHYRSLGLQVVSGLSTELEDVKKAALIDGDAVTAAVLKLDHRLAKTEELLNTDLKNLEEESEFQHSLSDFVESAKEEVKWLTVEEKRIMAEVKNTADYFHGNAGKDEGLRLFVIVRDFLLMLDKVCKEVKVSTKTVAIKDPSSWKKEPSSMSSSPDTHQPSPSDMHRRLFPAIAERRIHDSSSDDDDDDNERLPT 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03958 837 MobiDBLite consensus disorder prediction 787 802 - -
Trre11g03958 837 Gene3D Formin, FH2 domain 366 788 IPR042201 -
Trre11g03958 837 MobiDBLite consensus disorder prediction 281 373 - -
Trre11g03958 837 SMART it6_source 360 782 IPR015425 -
Trre11g03958 837 MobiDBLite consensus disorder prediction 127 159 - -
Trre11g03958 837 MobiDBLite consensus disorder prediction 354 371 - -
Trre11g03958 837 Pfam Formin Homology 2 Domain 362 764 IPR015425 -
Trre11g03958 837 ProSiteProfiles Formin homology-2 (FH2) domain profile. 360 790 IPR015425 -
Trre11g03958 837 MobiDBLite consensus disorder prediction 811 825 - -
Trre11g03958 837 SUPERFAMILY Formin homology 2 domain (FH2 domain) 373 773 - -
Trre11g03958 837 MobiDBLite consensus disorder prediction 781 837 - -
Trre11g03958 837 MobiDBLite consensus disorder prediction 302 343 - -
Trre11g03958 837 PANTHER FORMIN-RELATED 122 825 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Trre11g03958 837 MobiDBLite consensus disorder prediction 127 158 - -
Trre11g03958 837 MobiDBLite consensus disorder prediction 619 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03958 Trre-Chr11 52830701 52835278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03958 174 820 FH2 protein (formin) Gene Family AT5G54650 49.160 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03958 - - psat:127086789 1068.91