Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03955 ATGGACATGGATTCCACAGGTGGTTCTTCTTGTTGGCTCTATGATTATGGCTATGATATTTCTGTTCCTGCACCTGATTTCATGGCTTCTGATCATCACTCTCCTGCTTCTGTTTTCACCTGGAATATGCCTCAGACTCATATCATCAAGCCTCCTTCCTCCAATATCAGCTTGGAAATGGAATACTCACTGGACTCAACTGTATTGGAAAGTGGTCCTTCAAAGCGCTTGGAAATGGAATACTCACTGGATTCAACTGTACTGGAAAATGGCCCTTCAAAGCGGTTAAAGACAGAATCATGTGCATCTGGCTCGAAGGCATGTCGCGAGAAACAGCGCAGGGATAAACTGAATGACAAGTTTCTGGAATTGAGTTCTGTCTTAGAGCCTGATACACTGCCGAAAACAGACAAAGTTACCTTATTAAATGATGCGGTACGTGTGGTTACACAATTAAGAAATGAAGCAGAAAGGCTGAAGGAAAGGAATGATGAATTGCGCGAAAAAGTTAAAGAACTTAAGGCTGAGAAAAATGAGCTTCGCGATGAGAAAAATAAGCTGAAGTTAGACAAAGAAAAGTTGGAACAGCAAGTGAAATTAACAAGTGTACAGTCAAGCTTCCTCTCGAATGCCATGGCGGCTAAAGGACAATCTGCTGCTAACCACAAGCTGATGCCTTTCATTGGTTATCCTGGAATTTCGATGTGGCAGTTTATGTCACCTGCTACAGTTGATACATCACAGGATCATCTGCTTCGACCTCCCGTTGCTTAA 774 0.4264 MDMDSTGGSSCWLYDYGYDISVPAPDFMASDHHSPASVFTWNMPQTHIIKPPSSNISLEMEYSLDSTVLESGPSKRLEMEYSLDSTVLENGPSKRLKTESCASGSKACREKQRRDKLNDKFLELSSVLEPDTLPKTDKVTLLNDAVRVVTQLRNEAERLKERNDELREKVKELKAEKNELRDEKNKLKLDKEKLEQQVKLTSVQSSFLSNAMAAKGQSAANHKLMPFIGYPGISMWQFMSPATVDTSQDHLLRPPVA 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03955 257 SMART finulus 107 158 IPR011598 GO:0046983
Trre11g03955 257 Pfam Helix-loop-helix DNA-binding domain 105 152 IPR011598 GO:0046983
Trre11g03955 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 168 IPR036638 GO:0046983
Trre11g03955 257 CDD bHLH_AtILR3_like 106 181 - -
Trre11g03955 257 Gene3D - 105 183 IPR036638 GO:0046983
Trre11g03955 257 Coils Coil 142 204 - -
Trre11g03955 257 PANTHER BHLH TRANSCRIPTION FACTOR 10 257 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Trre11g03955 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 101 152 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03955 Trre-Chr11 52798937 52800975 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03955 81 257 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51070 59.563 6.40e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre11g03955 HLH 2.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03955 - - psat:127086780 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03955 11 52798937 52800975 Trre11g03955 11 52798937 52800975 ECH