Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03954 ATGGACATGGATTCCACAGGTGGTTCTTCTTGTTGGCTCTATGATTATGGCTATGATATTTCTGTTCCTGCACCTGATTTCATGGCTTCTGATCATCACTCTCCTGCTTCTGTTTTCACCTGGAATATGCCTCAGACTCATATCATCAAGCCTCCTTCCTCCAATATCAGCTTGGAAATGGAATACTCACTGGATTCAACTGTACTGGAAAATGGCCCTTCAAAGCGGTTAAAGACAGAATCATGTGCATCTGGCTCGAAGGCATGTCGCGAGAAACAGCGCAGGGATAAACTGAATGACAAGTTTCTGGAATTGAGTTCTGTCTTAGAGCCTGATACACTGCCGAAAACAGACAAAGTTACCTTATTAAATGATGCGGTACGTGTGGTTACACAATTAAGAAATGAAGCAGAAAGGCTGAAGGAAAGGAATGATGAATTGCGCGAAAAAGTTAAAGAACTTAAGGCTGAGAAAAATGAGCTTCGCGATGAGAAAAATAAGCTGAAGTTAGACAAAGAAAAGTTGGAACAGCAAGTGAAATTAACAAGTGTACAGTCAAGCTTCCTCTCGAATGCCATGGCGGCTAAAGGACAATCTGCTGCTAACCACAAGCTGATGCCTTTCATTGGTTATCCTGGAATTTCGATGTGGCAGTTTATGTCACCTGCTACAGTTGATACATCACAGGATCATCTGCTTCGACCTCCCGTTGCTTAA 717 0.4254 MDMDSTGGSSCWLYDYGYDISVPAPDFMASDHHSPASVFTWNMPQTHIIKPPSSNISLEMEYSLDSTVLENGPSKRLKTESCASGSKACREKQRRDKLNDKFLELSSVLEPDTLPKTDKVTLLNDAVRVVTQLRNEAERLKERNDELREKVKELKAEKNELRDEKNKLKLDKEKLEQQVKLTSVQSSFLSNAMAAKGQSAANHKLMPFIGYPGISMWQFMSPATVDTSQDHLLRPPVA 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03954 238 SMART finulus 88 139 IPR011598 GO:0046983
Trre11g03954 238 CDD bHLH_AtILR3_like 87 162 - -
Trre11g03954 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 149 IPR036638 GO:0046983
Trre11g03954 238 Coils Coil 123 185 - -
Trre11g03954 238 Pfam Helix-loop-helix DNA-binding domain 86 133 IPR011598 GO:0046983
Trre11g03954 238 Gene3D - 86 161 IPR036638 GO:0046983
Trre11g03954 238 PANTHER BHLH TRANSCRIPTION FACTOR 6 238 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Trre11g03954 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 82 133 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03954 Trre-Chr11 52798937 52800975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03954 52 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51070 57.732 1.86e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre11g03954 HLH 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03954 - - psat:127086780 345.51