Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03948 ATGCATTCTTCAAACCTTATTCTCTTTACATTTACATTTGCTTCCCTTATGCAAACATCTTTTGGAACCGATCCACTTTTTCATTTTTGCTCAAAATCGGGTAACTTCACTGCCCAGAGTCCATATAAATCAAGTTTGAAAAGACTCATCAACTCACTTATCTATGAGACGCCTTCAACGGGATTCGACAATAGGTCAGTGGGTTTGGCTCAATACCAAAACCAACTAGTATATGGGCTAGCTCTTTGTCGTGGTGATGTATCAACTTTAGAATGCAAAACTTGTGTCTCAGAGGCAACCAAAGAAATCCAAAGTCGCTGCCCATATAATAAAGGCGCGACCATATGGTACGACAATTGCATGTTCAAATACTTAAATGTTGATTTCTTTGGCAAGATTGATAATACAAGCAAGTTCTCTTTATTAAATGTACAAAATGTTGATGATCCTATCAAATTCAACAACATGACTAAGAACTTATTGAGCATACTTGCTTATGAAGCTTCTATGCATCATAAACTTTATGCTAGTGGACAATTGAAGATTGGAGAATCAAAGACAGTTTATGGGTTAACTCAATGCACTAGAGACCTTTCTAGTGTTGATTGTAAGAAATGTCTAGATGATGCAATTAGTGAGCTTCCAAATTGTTGTGATGGAAAAAAAGGAGGCAGGATTGTTGGTGGAAGTTGTAACATTCGATATGAAATTTACCCTTTTGTTAAGGAGTAG 732 0.3634 MHSSNLILFTFTFASLMQTSFGTDPLFHFCSKSGNFTAQSPYKSSLKRLINSLIYETPSTGFDNRSVGLAQYQNQLVYGLALCRGDVSTLECKTCVSEATKEIQSRCPYNKGATIWYDNCMFKYLNVDFFGKIDNTSKFSLLNVQNVDDPIKFNNMTKNLLSILAYEASMHHKLYASGQLKIGESKTVYGLTQCTRDLSSVDCKKCLDDAISELPNCCDGKKGGRIVGGSCNIRYEIYPFVKE 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03948 243 ProSiteProfiles Gnk2-homologous domain profile. 24 129 IPR002902 -
Trre11g03948 243 ProSiteProfiles Gnk2-homologous domain profile. 135 240 IPR002902 -
Trre11g03948 243 Pfam Salt stress response/antifungal 30 125 IPR002902 -
Trre11g03948 243 Pfam Salt stress response/antifungal 147 237 IPR002902 -
Trre11g03948 243 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 38-RELATED 7 242 - -
Trre11g03948 243 FunFam Cysteine-rich receptor-like protein kinase 25 137 240 - -
Trre11g03948 243 Gene3D - 134 240 IPR038408 -
Trre11g03948 243 Gene3D - 23 129 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03948 Trre-Chr11 52776541 52777272 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03948 77 242 Pollen Coat Proteome AT4G20670 45.087 2.41e-47 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03948 - - gmx:100527155 357.066