Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03944 ATGGAAGCTCTATGTGAGTTTTGTCGGGTTGTAAGAGCTATGGTTTACTGCAAGCCAGATTCTGCTCGTCTTTGCTTCCATTGCGATGGGATTGTACACTCTGCAAATTCTTTGTCTCGCAGGCATCCCCGCTCACTCCTCTGTGATAAGTGTCATTTCGACTCAGCAATTGTGCGCTGCGTCGAAAATAAACTATCTCTTTGTCAAGTTTGTGATTGGAATACAAATGACTGTTTTGTATTGGGACATAAACATGTGCTACTCACTTTCTATACTGGTTGTCCCTCTTTGGCAGAGTTAACTAAAATTTGGCCACATTTGGTTGATGCAAATTCATCAAATGCTGCTTGGGAATCACCAAGTACTAGTACTTTGCCTAAAATTGAAAGCAATACCGGTTGTGAGCAGCATTTGGAGCAGCAACCTGAAAAGATTGGCTTCATTGGTTTGGCGAACGAGAAGCTGGATGAAGAACAACCGTGTGTCAAATATGAACCTTGGATTGAGAAATCTCCTATCCTTCAATCAAATTCAAACTGCACACAATACTGCAAAGATCAAGCGTTTTTATTTAATCAAGACTCAAACCAACCAAAGCTTCAAGGATGCCTTGATGTCAAGGATCTTGTACTTCATGAGGGGACTAGTCTCTGTGAAGGTCTCAATGTGGATGATGTTCAATTAAACTTTGAAAATGCTGATGAAATATTTGATTGCTCTCAAAGTGCCACAAAATTCAACCACGAAGATGGAGGAATAGAATGTCTATTAATGGATAAAAACATTCCAGTCACAAAATGTAGCAGTCTCATTGGGGCTGCAGTAGAGGCTTCTTCATCAGTTCAACAAGATTGTGTGATTTTTCCATCATCAGGGGCTGGTGGATCAACAAGTGCGATGCAGGCCATCAACACTAATGCAAATTGTGCACTTATGACTCCTAGCTGTAACAGAAGCATGCCTCTAGGATTTCCTCAGAGTCAAATTCATTCAGGCATACCAATTCAATTACCTAACCTTAATGGTGAGAGCAATGTTACAGAACTTCTAGATTGTGGTTTACCTCCAGTCTTTCATCCTAGTGAATCCACATGGGAATCAAATTTAGAGGGTACATGCCCTCAAGCAAGGGATAAAGCCAAAATGAGATACCAAGAGAAAAAGAAAACTCGAACGTTTGGTAAGCAAATAAGATATGCGTCACGCAAAGCTAGGGCTGATACAAGAAAACGTGTGAAAGGTAGATTTGTTAAAGCTGGTGAAGCATATGATTATGATCCTAAATTGAGTGACATCTAA 1299 0.4034 MEALCEFCRVVRAMVYCKPDSARLCFHCDGIVHSANSLSRRHPRSLLCDKCHFDSAIVRCVENKLSLCQVCDWNTNDCFVLGHKHVLLTFYTGCPSLAELTKIWPHLVDANSSNAAWESPSTSTLPKIESNTGCEQHLEQQPEKIGFIGLANEKLDEEQPCVKYEPWIEKSPILQSNSNCTQYCKDQAFLFNQDSNQPKLQGCLDVKDLVLHEGTSLCEGLNVDDVQLNFENADEIFDCSQSATKFNHEDGGIECLLMDKNIPVTKCSSLIGAAVEASSSVQQDCVIFPSSGAGGSTSAMQAINTNANCALMTPSCNRSMPLGFPQSQIHSGIPIQLPNLNGESNVTELLDCGLPPVFHPSESTWESNLEGTCPQARDKAKMRYQEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPKLSDI 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03944 432 Pfam CCT motif 377 419 IPR010402 GO:0005515
Trre11g03944 432 SMART bboxneu5 1 47 IPR000315 GO:0008270
Trre11g03944 432 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 422 - -
Trre11g03944 432 CDD Bbox1_BBX-like 4 47 - -
Trre11g03944 432 ProSiteProfiles CCT domain profile. 377 419 IPR010402 GO:0005515
Trre11g03944 432 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03944 Trre-Chr11 52732738 52735053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03944 1 427 C2C2-CO-like Transcription Factor Family AT3G21880 38.621 2.45e-82 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre11g03944 CCT 1.8e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03944 - - gmx:100804738 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03944 11 52732738 52735053 Trre11g03944 11 52732738 52735053 ECH