Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03939 ATGGAACCAATTTGCTCTATTACTTCGACTTATGCCACTCAAATCTCTGCACTTCTCTCTCCTCCCTCACCTCACCAAATTCAGGAATATTATCACAACATTTTCTCTTCAAGCCACTTCAATAGCATCACTGTCAAACAAGATGACAACTTTGGAAAAGGTCTCTATGCTGCAACGGACTTCAAAGAGGATGAACTTGTTCTCAAGGACCAAATGCTTTTTGGGACTCAACATTCTTTCAACAAGATTGATTGTTTTGTCTGTAGCTTCTGCTTTCGTTTTATTGGCTCCATAGAAATTCAAATTGGTAGGAGGCTTTACTTGACACAATTAAGGGCCAATGAGAGTCACGATTGTGATGTAGGAAGCTCTTCAAAGTCTTCGAAAAACTGTCATCAAATGGATTCATCCGATGAAGAGGAGAGCACTTGGCAATGCAGTTCTGGTAGTTCCAAAACTAAAGTTCCTCTCCCTGAAGGTGTTATCGAATCATTGATGAACGGCCAATTGAGATTGCCTTACTCTGAGAAGTTCTCCTTGCCTCCAGCTGTTCCGTGCCATGGTGGATGTGGAGAAGCTTACTACTGCAGCATGTCATGTGCAGAGGCTGATTGGGAATCCTCCCATTCTTTACTCTGTACTGGTGAGAGTTGTGATCCAAGACGTAGGGAGGCACTCCTTAAATTTGTGAAACACGCTAATGAAACAAATGATATATTCCTCCTTGCTGCAAAAGTCATTTCTTCTACCATATTAAGGTACCGCAAGTTAAAAGCAAATCGTCTTGCAGAGAAAGGGAAAAGTGAGGCATCATGTGATTCAGACCACTCTAATTTCTCTCTTCTTTTGGAAGCTTGGAGGCCTATATCGATGGGATACAAAAAAAGGTGGTGGGACTGCATTGCATTACCAGATGATATTGATTCTTCCGATGAAGCGTCATTCAGGATGCAAATTAAAGAGTTGGCATTCGAGTCTCTCCAACTTCTTCAGACAGCCATATTTGACAAGGAATGTGAGCCGTTATTCTCCCTTGAAATCCATGGACATATCATTGGAATGTTTGAGCTGAATAATCTTGATTTGGTTGTTGCTTCTCCGATGGAGGATTACTTTTTATACATCGATGATATGACGAATCCTGACAAGGAAGAAGCTGAGAAAATTACACAACCAATTCTAGATGCTCTAGGTGAAGATTATTCTACTAGTTGCGAAGGAACTGCGTTTTTTCCTTTGCAAAGCTGTATGAACCATTCATGTTGTCCTAATGCCAAAGCATTCAAAAGAGATGAAGATAGAGATGGCCAAGCAACAATAATTGCACTGAGGCCTATCTGTAAGGGAGAAGAGATAACAATTTCATATGTTGATGAAGACCTTTCATTTGAGGAGAGACAAGCATCCCTTGCAGATTATGGTTTTAGATGCAGGTGTCCAAAATGTATTGAAGAAGAGCCATAA 1464 0.4071 MEPICSITSTYATQISALLSPPSPHQIQEYYHNIFSSSHFNSITVKQDDNFGKGLYAATDFKEDELVLKDQMLFGTQHSFNKIDCFVCSFCFRFIGSIEIQIGRRLYLTQLRANESHDCDVGSSSKSSKNCHQMDSSDEEESTWQCSSGSSKTKVPLPEGVIESLMNGQLRLPYSEKFSLPPAVPCHGGCGEAYYCSMSCAEADWESSHSLLCTGESCDPRRREALLKFVKHANETNDIFLLAAKVISSTILRYRKLKANRLAEKGKSEASCDSDHSNFSLLLEAWRPISMGYKKRWWDCIALPDDIDSSDEASFRMQIKELAFESLQLLQTAIFDKECEPLFSLEIHGHIIGMFELNNLDLVVASPMEDYFLYIDDMTNPDKEEAEKITQPILDALGEDYSTSCEGTAFFPLQSCMNHSCCPNAKAFKRDEDRDGQATIIALRPICKGEEITISYVDEDLSFEERQASLADYGFRCRCPKCIEEEP 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03939 487 Gene3D SET domain 375 486 IPR046341 -
Trre11g03939 487 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 14 486 IPR044237 GO:0008168
Trre11g03939 487 ProSiteProfiles SET domain profile. 41 457 IPR001214 GO:0005515
Trre11g03939 487 Pfam MYND finger 185 213 IPR002893 -
Trre11g03939 487 Pfam SET domain 52 456 IPR001214 GO:0005515
Trre11g03939 487 CDD SET_SMYD 396 482 - -
Trre11g03939 487 SMART set_7 41 463 IPR001214 GO:0005515
Trre11g03939 487 SUPERFAMILY SET domain 40 480 IPR046341 -
Trre11g03939 487 SUPERFAMILY HIT/MYND zinc finger-like 188 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03939 Trre-Chr11 52701728 52706236 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre11g03939 SET 1.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03939 - - gmx:100803651 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03939 11 52701728 52706236 Trre11g03939 11 52701728 52706236 ECH