Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03934 ATGGATCGCTCCTCTAAAGAAGTTCCATCTAATATTTTTGCGGATGACTCCAATTCTAATCAATCTTCCAAGGGTGAATTCTCTGAAGATGAGGAAGATCTTATCATCAGAATGTATAAACTAGTGGGGGATAGGTGGCCATTAATTGCTGGAAGAATTCCTGGAAGAACAGCTGAAGAAATAAAGAATTTCTGGACTTCAAGATACTCATCAAGTAGCCAATGA 225 0.3822 MDRSSKEVPSNIFADDSNSNQSSKGEFSEDEEDLIIRMYKLVGDRWPLIAGRIPGRTAEEIKNFWTSRYSSSSQ 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03934 74 Gene3D - 26 68 - -
Trre11g03934 74 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Trre11g03934 74 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 22 70 - -
Trre11g03934 74 SUPERFAMILY Homeodomain-like 23 69 IPR009057 -
Trre11g03934 74 CDD SANT 26 65 IPR001005 -
Trre11g03934 74 Pfam Myb-like DNA-binding domain 24 66 IPR001005 -
Trre11g03934 74 FunFam MYB-like transcription factor 26 68 - -
Trre11g03934 74 SMART sant 23 71 IPR001005 -
Trre11g03934 74 MobiDBLite consensus disorder prediction 10 24 - -
Trre11g03934 74 MobiDBLite consensus disorder prediction 1 30 - -
Trre11g03934 74 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 73 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03934 Trre-Chr11 52651183 52651750 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03934 24 70 MYB Transcription Factor Family AT5G14750 57.447 6.99e-18 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre11g03934 Myb_DNA-binding 1.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03934 - - tpra:123899046 120.938