Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03933 ATGGCCAACATGGATCGCTCCTCTAAAGAAGTTCCATCTAATATTTTTGCGGATGACTCCAATTCTAATCAATCTTCCAAGGGTGAATTCTCTGAAGATGAGGAAGATCTTATCATCAGAATGTATAAACTAGTGGGGGATAGGTGGCCATTAATTGCTGGAAGAATTCCTGGAAGAACAGCTGAAGAAATAAAGAATTTCTGGACTTCAAGATACTCATCAAGTAGCCAATGA 234 0.3889 MANMDRSSKEVPSNIFADDSNSNQSSKGEFSEDEEDLIIRMYKLVGDRWPLIAGRIPGRTAEEIKNFWTSRYSSSSQ 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03933 77 ProSiteProfiles Myb-like domain profile. 22 72 IPR001005 -
Trre11g03933 77 SUPERFAMILY Homeodomain-like 26 72 IPR009057 -
Trre11g03933 77 MobiDBLite consensus disorder prediction 1 33 - -
Trre11g03933 77 MobiDBLite consensus disorder prediction 1 27 - -
Trre11g03933 77 FunFam MYB-like transcription factor 29 71 - -
Trre11g03933 77 Gene3D - 29 71 - -
Trre11g03933 77 Pfam Myb-like DNA-binding domain 27 69 IPR001005 -
Trre11g03933 77 CDD SANT 29 68 IPR001005 -
Trre11g03933 77 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 76 IPR017930 -
Trre11g03933 77 SMART sant 26 74 IPR001005 -
Trre11g03933 77 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 24 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03933 Trre-Chr11 52651183 52651759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03933 27 73 MYB Transcription Factor Family AT5G14750 57.447 7.53e-18 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre11g03933 Myb_DNA-binding 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03933 - - tpra:123899046 126.716