Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03927 ATGGAAGCTGGACAACATCATCATCATCATCATCAACTTCTACCATTTGACATGACAACAAATAACAACAACAACAACAATACTTCCGAAAGCGATGTTCCTAGAATCCGTGAAGATGAATTATTCGATAGTGCTACAAAATCTGGTAACAGCGAAAATCAAGAAGCTGCTAATTCAGGTGATGATCAAGATCAACCTCGCGCTAAGAAGAAACGTTATCACCGTCATACACAACATCAGATCCAAGAAATGGAAGCTTTTTTTAAGGAATGTCCACACCCTGATGATAAGCAAAGGAAGGAACTAAGCAGAGAGTTAGGGTTAGAGCCATTGCAAGTGAAATTTTGGTTTCAAAACAAACGTACTCAAATGAAGACTCAACAGGAGAGGCATGAGAATACTCAACTAAGAACTGAAAATGAGAAACTTCGTGCTGATAACATGAGGTTTAGAGAAGCGCTTAGCAATGCTTCTTGTCCTAATTGTGGTGGACCAACTGCTATTGGAGAAATGTCGTTTGATGAACATCACTTAAGGCTCGAAAATGCTCGCCTTAGAGAAGAGATTGATAGGATATCAGCCATTGCTGCGAAGTATGTTGGGAAGCCGGTGGTGAGTTACCCACTACTCTCCCCTACATCGGTTCCTCCTCGTCCTCTAGACCTCGGCATTGGTGGTTTCGGAGGACAACCAGGAGTCGGTGGAGGAGATATGTATGGAGCCGGAGATCTTCTTAGATCAATAAGTGGACCAACTGAAGCTGATAAGCCAATGATAATTGAGCTAGCTGTTGCTGCTATGGAAGAACTCATTGGAATGGCACAAATGGGTGATCCACTTTGGTTAACTACACTTGAAGGTGGTTCAATACTCAATGAAGAAGAATATGTTAGGTCTTTTCCTAGAGGAATTGGTCCAAAACCAGCTGGTTTTAAATGTGAAGCTTCAAGAGAAACCTCTGTTGTCATCATGAATCATGTTAATCTTGTTGAGATCCTCATGGACGTGAACCAATGGTCCACAGTTTTTTCTGGAATTGTTTCAAGAGCAATGACATTGGAAGTGCTATCAACTGGGGTGGCAGGGAATTACAATGGTGCATTACAAGTGATGACAGCTGAACTTCAAGTACCTTCACCACTAGTGCCAACTAGAGAGAGTTATTTTGTAAGGTATTGTAAGCAACATGCTGATGGTACTTGGGCAGTTGTGGATGTTTCTTTGGACAATTTGCGCCCTAGTCCTTCTGCTAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCCAATGGCTACTCAAAGGTTATATGGGTGGAGCATGTAGAAGTGGATGATAGAGGTGTTCATAATCTATACAAACAACTTGTTAGCTCTGGACATGCATTTGGTGCAAAACGTTGGATTGCAACGTTAGATCGACAATGTGAAAGACTTGCTAGTGCCATGGCAACCAACATTCCCACAGTCGATGTCGGCGTGATAACAAACCAAGATGGAAGAAAGAGCATGTTAAAACTAGCTGAAAGAATGTGCATAAGCTTTTGTGCTGGAGTGAGTGCTTCAACAGCTCACACGTGGACAACACTTTCGGGTACAGGAGCTGATGATGTAAGGGTAATGACCCGTAAAAGTGTAGATGACCCAGGAAGACCAGCTGGCATTGTCCTTAGTGCTGCAACTTCTTTTTGGCTTCCAGTTACACCTAAAAGAGTTTTTGAATTTCTTAGAGATGAAAACTCAAGAAGTGAGTGGGATATCCTTTCCAATGGTGGAGTTGTTCAAGAAATGGCACATATTGCTAATGGAAGAGATACTGGAAATTGTGTTTCTCTTCTTCGAGTGAATAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCACAGACACAACAGGTTCATTTGTGATCTATGCACCTGTAGACATAGTTGCAATGAATGTGGTACTAAATGGAGGTGATCCAGATTATGTAGCACTTCTTCCTTCTGGATTTGCTATACTTCCAGATGGAGGTGTTGGTGGTGAAAATGGAAATGGTGGATCTCTATTAACAGTTGCATTTCAAATATTGGTTGATTCTGTTCCTACTGCAAAACTTTCTCTTGGATCTGTTGCTACTGTTAATAATCTTATTGCTTGTACTGTTGAGAGGATTAAGGCTTCTTTGTCTGGCGAAGTTGCTTGA 2205 0.4145 MEAGQHHHHHHQLLPFDMTTNNNNNNNTSESDVPRIREDELFDSATKSGNSENQEAANSGDDQDQPRAKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQQERHENTQLRTENEKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLLSPTSVPPRPLDLGIGGFGGQPGVGGGDMYGAGDLLRSISGPTEADKPMIIELAVAAMEELIGMAQMGDPLWLTTLEGGSILNEEEYVRSFPRGIGPKPAGFKCEASRETSVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMCISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPAGIVLSAATSFWLPVTPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDTTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGGVGGENGNGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEVA 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03927 734 SUPERFAMILY Bet v1-like 500 726 - -
Trre11g03927 734 SMART START_1 261 480 IPR002913 GO:0008289
Trre11g03927 734 ProSitePatterns 'Homeobox' domain signature. 102 125 IPR017970 GO:0000981|GO:0006355
Trre11g03927 734 SMART HOX_1 68 131 IPR001356 GO:0003677
Trre11g03927 734 MobiDBLite consensus disorder prediction 1 78 - -
Trre11g03927 734 Gene3D - 55 144 - -
Trre11g03927 734 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 67 729 IPR042160 -
Trre11g03927 734 CDD START_ArGLABRA2_like 256 479 - -
Trre11g03927 734 ProSiteProfiles 'Homeobox' domain profile. 67 127 IPR001356 GO:0003677
Trre11g03927 734 FunFam Homeobox-leucine zipper protein GLABRA 2 261 479 - -
Trre11g03927 734 SUPERFAMILY Bet v1-like 252 482 - -
Trre11g03927 734 CDD homeodomain 70 128 IPR001356 GO:0003677
Trre11g03927 734 Gene3D - 307 477 IPR023393 -
Trre11g03927 734 MobiDBLite consensus disorder prediction 15 31 - -
Trre11g03927 734 Pfam Homeodomain 70 125 IPR001356 GO:0003677
Trre11g03927 734 Pfam START domain 262 480 IPR002913 GO:0008289
Trre11g03927 734 SUPERFAMILY Homeodomain-like 56 128 IPR009057 -
Trre11g03927 734 Coils Coil 126 153 - -
Trre11g03927 734 FunFam Homeobox-leucine zipper protein HDG1 56 143 - -
Trre11g03927 734 MobiDBLite consensus disorder prediction 46 61 - -
Trre11g03927 734 ProSiteProfiles START domain profile. 252 483 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03927 Trre-Chr11 52517394 52522513 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03927 20 734 Homeobox Transcription Factor Family AT1G05230 79.057 0.0 1141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre11g03927 START 3.6e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03927 K09338 - gmx:100809556 1281.54