Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03926 ATGCAAGCTAGTTTAATGATTCCGGCTAGTAACATGCCTTCAATAATAGGAAGAAACAACAACAACAACGTTGGTGTCTTTGGATTTTCTTCATCTCTCTCTCTTGGCCAGCCAAATCTAATGGAAGCTGGACAACATCATCATCATCATCATCAACTTCTACCATTTGACATGACAACAAATAACAACAACAACAACAATACTTCCGAAAGCGATGTTCCTAGAATCCGTGAAGATGAATTATTCGATAGTGCTACAAAATCTGGTAACAGCGAAAATCAAGAAGCTGCTAATTCAGGTGATGATCAAGATCAACCTCGCGCTAAGAAGAAACGTTATCACCGTCATACACAACATCAGATCCAAGAAATGGAAGCTTTTTTTAAGGAATGTCCACACCCTGATGATAAGCAAAGGAAGGAACTAAGCAGAGAGTTAGGGTTAGAGCCATTGCAAGTGAAATTTTGGTTTCAAAACAAACGTACTCAAATGAAGACTCAACAGGAGAGGCATGAGAATACTCAACTAAGAACTGAAAATGAGAAACTTCGTGCTGATAACATGAGGTTTAGAGAAGCGCTTAGCAATGCTTCTTGTCCTAATTGTGGTGGACCAACTGCTATTGGAGAAATGTCGTTTGATGAACATCACTTAAGGCTCGAAAATGCTCGCCTTAGAGAAGAGATTGATAGGATATCAGCCATTGCTGCGAAGTATGTTGGGAAGCCGGTGGTGAGTTACCCACTACTCTCCCCTACATCGGTTCCTCCTCGTCCTCTAGACCTCGGCATTGGTGGTTTCGGAGGACAACCAGGAGTCGGTGGAGGAGATATGTATGGAGCCGGAGATCTTCTTAGATCAATAAGTGGACCAACTGAAGCTGATAAGCCAATGATAATTGAGCTAGCTGTTGCTGCTATGGAAGAACTCATTGGAATGGCACAAATGGGTGATCCACTTTGGTTAACTACACTTGAAGGTGGTTCAATACTCAATGAAGAAGAATATGTTAGGTCTTTTCCTAGAGGAATTGGTCCAAAACCAGCTGGTTTTAAATGTGAAGCTTCAAGAGAAACCTCTGTTGTCATCATGAATCATGTTAATCTTGTTGAGATCCTCATGGACGTGAACCAATGGTCCACAGTTTTTTCTGGAATTGTTTCAAGAGCAATGACATTGGAAGTGCTATCAACTGGGGTGGCAGGGAATTACAATGGTGCATTACAAGTGATGACAGCTGAACTTCAAGTACCTTCACCACTAGTGCCAACTAGAGAGAGTTATTTTGTAAGGTATTGTAAGCAACATGCTGATGGTACTTGGGCAGTTGTGGATGTTTCTTTGGACAATTTGCGCCCTAGTCCTTCTGCTAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCCAATGGCTACTCAAAGGTTATATGGGTGGAGCATGTAGAAGTGGATGATAGAGGTGTTCATAATCTATACAAACAACTTGTTAGCTCTGGACATGCATTTGGTGCAAAACGTTGGATTGCAACGTTAGATCGACAATGTGAAAGACTTGCTAGTGCCATGGCAACCAACATTCCCACAGTCGATGTCGGCGTGATAACAAACCAAGATGGAAGAAAGAGCATGTTAAAACTAGCTGAAAGAATGTGCATAAGCTTTTGTGCTGGAGTGAGTGCTTCAACAGCTCACACGTGGACAACACTTTCGGGTACAGGAGCTGATGATGTAAGGGTAATGACCCGTAAAAGTGTAGATGACCCAGGAAGACCAGCTGGCATTGTCCTTAGTGCTGCAACTTCTTTTTGGCTTCCAGTTACACCTAAAAGAGTTTTTGAATTTCTTAGAGATGAAAACTCAAGAAGTGAGTGGGATATCCTTTCCAATGGTGGAGTTGTTCAAGAAATGGCACATATTGCTAATGGAAGAGATACTGGAAATTGTGTTTCTCTTCTTCGAGTGAATAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCACAGACACAACAGGTTCATTTGTGATCTATGCACCTGTAGACATAGTTGCAATGAATGTGGTACTAAATGGAGGTGATCCAGATTATGTAGCACTTCTTCCTTCTGGATTTGCTATACTTCCAGATGGAGGTGTTGGTGGTGAAAATGGAAATGGTGGATCTCTATTAACAGTTGCATTTCAAATATTGGTTGATTCTGTTCCTACTGCAAAACTTTCTCTTGGATCTGTTGCTACTGTTAATAATCTTATTGCTTGTACTGTTGAGAGGATTAAGGCTTCTTTGTCTGGCGAAGTTGCTTGA 2325 0.4133 MQASLMIPASNMPSIIGRNNNNNVGVFGFSSSLSLGQPNLMEAGQHHHHHHQLLPFDMTTNNNNNNNTSESDVPRIREDELFDSATKSGNSENQEAANSGDDQDQPRAKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQQERHENTQLRTENEKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLLSPTSVPPRPLDLGIGGFGGQPGVGGGDMYGAGDLLRSISGPTEADKPMIIELAVAAMEELIGMAQMGDPLWLTTLEGGSILNEEEYVRSFPRGIGPKPAGFKCEASRETSVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMCISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPAGIVLSAATSFWLPVTPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDTTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGGVGGENGNGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEVA 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03926 774 Pfam START domain 302 520 IPR002913 GO:0008289
Trre11g03926 774 ProSiteProfiles 'Homeobox' domain profile. 107 167 IPR001356 GO:0003677
Trre11g03926 774 ProSitePatterns 'Homeobox' domain signature. 142 165 IPR017970 GO:0000981|GO:0006355
Trre11g03926 774 FunFam Homeobox-leucine zipper protein GLABRA 2 301 519 - -
Trre11g03926 774 MobiDBLite consensus disorder prediction 44 119 - -
Trre11g03926 774 Gene3D - 347 517 IPR023393 -
Trre11g03926 774 Coils Coil 166 193 - -
Trre11g03926 774 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 107 769 IPR042160 -
Trre11g03926 774 FunFam Homeobox-leucine zipper protein HDG1 96 183 - -
Trre11g03926 774 Gene3D - 95 184 - -
Trre11g03926 774 ProSiteProfiles START domain profile. 292 523 IPR002913 GO:0008289
Trre11g03926 774 SUPERFAMILY Bet v1-like 540 766 - -
Trre11g03926 774 CDD homeodomain 110 168 IPR001356 GO:0003677
Trre11g03926 774 CDD START_ArGLABRA2_like 296 519 - -
Trre11g03926 774 MobiDBLite consensus disorder prediction 55 71 - -
Trre11g03926 774 SMART START_1 301 520 IPR002913 GO:0008289
Trre11g03926 774 Pfam Homeodomain 110 165 IPR001356 GO:0003677
Trre11g03926 774 SMART HOX_1 108 171 IPR001356 GO:0003677
Trre11g03926 774 SUPERFAMILY Bet v1-like 292 522 - -
Trre11g03926 774 MobiDBLite consensus disorder prediction 86 101 - -
Trre11g03926 774 SUPERFAMILY Homeodomain-like 96 168 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03926 Trre-Chr11 52517394 52523386 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03926 60 774 Homeobox Transcription Factor Family AT1G05230 79.057 0.0 1141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre11g03926 START 4e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03926 K09338 - gmx:100797992 1321.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03926 11 52517394 52523386 Trre11g03926 11 52517394 52523386 ECH
Trre11g03926 11 52517394 52523386 Trre7g01310 7 9493979 9499261 PCT