Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03922 ATGAAAATTAATAGGGTTGGTTATTGGTCTAATCATTCAGGATTTTCGGTTGTTCCCCCCGAAGTTCTTGCGAAAAAGAAACATCCTAGGGTTTCCGTAGATCAGAAGCTTGACAATATTACTTGGCCAGGTGGAAAAACAGAAAGACCGCGCGGATGGGTGATTGCGGATAATGCAAAGCCACTGAGAATTGGAGTGCCGAGGAGAGCTAGTTTCGTTGAATTTGTAACTGAACTGAAAGATAGTCATAAGATTCAAGGGTATTGTATCGATATCTTCATGAAAGCCTTGGAATTTATTCCGTATGAAATTCCTTTTGTATTCAAACCTGTTGGGAATGGTAAAGCAAATCCAAATTATGATGCACTTGTCAAAAAGATTGACGAAAATGTATATGATGCAGTTGTTGGAGACATTGCGATTGTGACAAACCGAACAAAGATTGCGGATTTTTCTCAACCTTTTGCATCATCTAGCCTTGTTATAGTGGCTCCTATCAACAGTTCAAAATCAAATGCTTGGGTATTCCTCAAACCATTCTCACCAGATATGTGGTGTATCATTGCTGCATCATTTCTAATGATTGGAGTTGTTATATGGATTCTTGAACACCGAGTCAACGATGAGTTCCGTGGTCCTCCTAAGAGACAACTTGTCACAATGTTTATGTTCAGCCTCTCGACACTCTTTAAGACAAATAATAATACCGTAAGCTCGCTTTCTAAAATGGTGTTGATAGTATGGCTTTTCCTACTGATGGTGATAACAGCTAGCTATACAGCAAGCTTGACGTCAATTCTCACAGTGGAACAGCTTTCATCGCCGATCACAGGAATCGATAGCTTGATTGCAAGTAACTGGCCTATTGGATACCAAGTAGGATCGTTTGCTTACAGCTATCTGACAGATAATCTTTATGTATCAAGATCAAGACTTGTTTCCTTAGGCTCCCCCGAGGAATATGCGGTAGCACTTCGGAATGGACCGTCTGGTGGTGGTGTAGCAGCTATCGTCGATGAGCTTCCGTATGTGGAATTGTTTCTGTCAAAAGAAACTGAATTCGGTATTATCGGTCAGCCATTTACCAGAAGTAGTTGGGGATTTGCTTTTCAAAGAGATTCCCCTCTTGCACTTGACATGTCAACTGCAATATTGAAACTAGCCGAGAGTGGAGAGCTTCAAAAGATACATGAGAAATGGTTTTGCAAGATGGGTTGTCCCGGCGAAAGGAAAAGCAACCCTAAACCAGACCAACTTCATCTGATCAGCTTTTGGGGTCTATATCTGTCGTGCGCTGTCATCTCTGTCGTCGCACTTGTTTTGTTTCTGCTGCGAATGATTAGCCAATATGTTGGCTTCAAACAAAGGCAAAAGGACATTGCTGCTCCATCCTCGGAACAATCGAAAAGTCATTGTTCCCGAGTTGTTGTTAATTTCTTTAACTTCATTGATAAAAAGGAAGATGCCATCAAGAAAATGTTCACTCAATGTGACAATCCTCATAACCCCAACTGA 1515 0.4112 MKINRVGYWSNHSGFSVVPPEVLAKKKHPRVSVDQKLDNITWPGGKTERPRGWVIADNAKPLRIGVPRRASFVEFVTELKDSHKIQGYCIDIFMKALEFIPYEIPFVFKPVGNGKANPNYDALVKKIDENVYDAVVGDIAIVTNRTKIADFSQPFASSSLVIVAPINSSKSNAWVFLKPFSPDMWCIIAASFLMIGVVIWILEHRVNDEFRGPPKRQLVTMFMFSLSTLFKTNNNTVSSLSKMVLIVWLFLLMVITASYTASLTSILTVEQLSSPITGIDSLIASNWPIGYQVGSFAYSYLTDNLYVSRSRLVSLGSPEEYAVALRNGPSGGGVAAIVDELPYVELFLSKETEFGIIGQPFTRSSWGFAFQRDSPLALDMSTAILKLAESGELQKIHEKWFCKMGCPGERKSNPKPDQLHLISFWGLYLSCAVISVVALVLFLLRMISQYVGFKQRQKDIAAPSSEQSKSHCSRVVVNFFNFIDKKEDAIKKMFTQCDNPHNPN 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03922 504 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 3 450 IPR015683 -
Trre11g03922 504 Pfam Bacterial extracellular solute-binding proteins, family 3 78 401 IPR001638 -
Trre11g03922 504 Gene3D - 173 302 - -
Trre11g03922 504 SMART GluR_14 63 403 IPR001320 GO:0015276|GO:0016020
Trre11g03922 504 SUPERFAMILY Periplasmic binding protein-like II 41 401 - -
Trre11g03922 504 Gene3D - 350 408 - -
Trre11g03922 504 FunFam Glutamate receptor 298 405 - -
Trre11g03922 504 Gene3D - 54 172 - -
Trre11g03922 504 FunFam Glutamate receptor 57 173 - -
Trre11g03922 504 Pfam Ligand-gated ion channel 402 432 IPR001320 GO:0015276|GO:0016020
Trre11g03922 504 CDD GluR_Plant 60 401 - -
Trre11g03922 504 FunFam Glutamate receptor 173 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03922 Trre-Chr11 52471038 52473499 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03922 3 502 Ion Channels AT2G32400 57.312 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03922 K05387 - gmx:100796389 848.966