Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03921 ATGGAGATGTTTTGTGATGATGTTATCAATAGTAGTGGTTATGATGTTATCAATATCAATCAGATGAAAATTAATAGGGTTGGTTATTGGTCTAATCATTCAGGATTTTCGGTTGTTCCCCCCGAAGTTCTTGCGAAAAAGAAACATCCTAGGGTTTCCGTAGATCAGAAGCTTGACAATATTACTTGGCCAGGTGGAAAAACAGAAAGACCGCGCGGATGGGTGATTGCGGATAATGCAAAGCCACTGAGAATTGGAGTGCCGAGGAGAGCTAGTTTCGTTGAATTTGTAACTGAACTGAAAGATAGTCATAAGATTCAAGGGTATTGTATCGATATCTTCATGAAAGCCTTGGAATTTATTCCGTATGAAATTCCTTTTGTATTCAAACCTGTTGGGAATGGTAAAGCAAATCCAAATTATGATGCACTTGTCAAAAAGATTGACGAAAATGTATATGATGCAGTTGTTGGAGACATTGCGATTGTGACAAACCGAACAAAGATTGCGGATTTTTCTCAACCTTTTGCATCATCTAGCCTTGTTATAGTGGCTCCTATCAACAGTTCAAAATCAAATGCTTGGGTATTCCTCAAACCATTCTCACCAGATATGTGGTGTATCATTGCTGCATCATTTCTAATGATTGGAGTTGTTATATGGATTCTTGAACACCGAGTCAACGATGAGTTCCGTGGTCCTCCTAAGAGACAACTTGTCACAATGTTTATGTTCAGCCTCTCGACACTCTTTAAGACAAATAATAATACCGTAAGCTCGCTTTCTAAAATGGTGTTGATAGTATGGCTTTTCCTACTGATGGTGATAACAGCTAGCTATACAGCAAGCTTGACGTCAATTCTCACAGTGGAACAGCTTTCATCGCCGATCACAGGAATCGATAGCTTGATTGCAAGTAACTGGCCTATTGGATACCAAGTAGGATCGTTTGCTTACAGCTATCTGACAGATAATCTTTATGTATCAAGATCAAGACTTGTTTCCTTAGGCTCCCCCGAGGAATATGCGGTAGCACTTCGGAATGGACCGTCTGGTGGTGGTGTAGCAGCTATCGTCGATGAGCTTCCGTATGTGGAATTGTTTCTGTCAAAAGAAACTGAATTCGGTATTATCGGTCAGCCATTTACCAGAAGTAGTTGGGGATTTGCTTTTCAAAGAGATTCCCCTCTTGCACTTGACATGTCAACTGCAATATTGAAACTAGCCGAGAGTGGAGAGCTTCAAAAGATACATGAGAAATGGTTTTGCAAGATGGGTTGTCCCGGCGAAAGGAAAAGCAACCCTAAACCAGACCAACTTCATCTGATCAGCTTTTGGGGTCTATATCTGTCGTGCGCTGTCATCTCTGTCGTCGCACTTGTTTTGTTTCTGCTGCGAATGATTAGCCAATATGTTGGCTTCAAACAAAGGCAAAAGGACATTGCTGCTCCATCCTCGGAACAATCGAAAAGTCATTGTTCCCGAGTTGTTGTTAATTTCTTTAACTTCATTGATAAAAAGGAAGATGCCATCAAGAAAATGTTCACTCAATGTGACAATCCTCATAACCCCAACTGA 1578 0.4068 MEMFCDDVINSSGYDVININQMKINRVGYWSNHSGFSVVPPEVLAKKKHPRVSVDQKLDNITWPGGKTERPRGWVIADNAKPLRIGVPRRASFVEFVTELKDSHKIQGYCIDIFMKALEFIPYEIPFVFKPVGNGKANPNYDALVKKIDENVYDAVVGDIAIVTNRTKIADFSQPFASSSLVIVAPINSSKSNAWVFLKPFSPDMWCIIAASFLMIGVVIWILEHRVNDEFRGPPKRQLVTMFMFSLSTLFKTNNNTVSSLSKMVLIVWLFLLMVITASYTASLTSILTVEQLSSPITGIDSLIASNWPIGYQVGSFAYSYLTDNLYVSRSRLVSLGSPEEYAVALRNGPSGGGVAAIVDELPYVELFLSKETEFGIIGQPFTRSSWGFAFQRDSPLALDMSTAILKLAESGELQKIHEKWFCKMGCPGERKSNPKPDQLHLISFWGLYLSCAVISVVALVLFLLRMISQYVGFKQRQKDIAAPSSEQSKSHCSRVVVNFFNFIDKKEDAIKKMFTQCDNPHNPN 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03921 525 FunFam Glutamate receptor 78 194 - -
Trre11g03921 525 Gene3D - 3 84 - -
Trre11g03921 525 Pfam Ligand-gated ion channel 423 453 IPR001320 GO:0015276|GO:0016020
Trre11g03921 525 Pfam Bacterial extracellular solute-binding proteins, family 3 99 422 IPR001638 -
Trre11g03921 525 FunFam Glutamate receptor 319 426 - -
Trre11g03921 525 SUPERFAMILY Periplasmic binding protein-like II 62 422 - -
Trre11g03921 525 Gene3D - 194 323 - -
Trre11g03921 525 Gene3D - 371 429 - -
Trre11g03921 525 FunFam Glutamate receptor 194 331 - -
Trre11g03921 525 CDD GluR_Plant 81 422 - -
Trre11g03921 525 Gene3D - 85 193 - -
Trre11g03921 525 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 471 IPR015683 -
Trre11g03921 525 SMART GluR_14 84 424 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03921 Trre-Chr11 52470975 52473499 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03921 14 523 Ion Channels AT2G32400 56.977 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03921 K05387 - gmx:100796389 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03921 11 52470975 52473499 Trre11g03921 11 52470975 52473499 ECH