Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03920 ATGAAGCAGTTCATGGTTTTGTATCTTATGATTTGGATTTGGGTAATTTTCTTTTGTGGTATTGTTCATAGTGAAAGACCTGAAAGTGTGAACATTGGAGCAGTTTTCACCTTTGATTCTGTGATAGGTAGAGTTGCAAAAGCAGCTATGGAAATGGCTGTTTCTGATGTCAATTCTGACCAAACAGTTCTTAATGGGACAAAGCTTAACTTGATAATGAAGGATGGTATGTGTAATGCTTTTCTTGGATCAACTGGAGCTTTTCAGGTACTTGAGCAAGGGGTTGCAGCCATAATTGGCCCACAGTCATCCGCCATAGCTCATTCGATTTCTCAAATAGCCGATGCTGTCAAAGTTCCCCTTATTTCATATGCTGCAACTGATCCAACCCTATCATCCCTTCAGTTTCCTCTCTTTTTTCGCACCGTACAAAGTGACTCAGAGCAAATGGCTGCAATGGCCAATTTAATTGACTTTAACGGATGGAAAGAAGTCATTGTTGTCTTCTTGGATGACGACTATGGAAGAAATGGAGTATCTGTTTTGAGTGATGAACTCGAAAATAGGAGATTGAAAATTTCTCATAAACTAGCTTTGAGTATTCATTTCGACCTAGATGAAATCACTAAGTTGCTCAATCAATCCAAAGTATTTAACCCTCGTGTTTTTGTCGTTCATATCAACCCTGATCCTAGACTGAGGATTTTTTCCGTTGCTCACAAACTTCAAATGATGACTAGTGAATATGTTTGGCTTGTCACAGATTGGTTCGCTGCTACCCTACATTCATTTTTGCCAATGAATCAGAAATCTCTTAGCGTTGTTGAAGGAGTTGTTGGTCTTCGTCAACACATCCCGGATTCTAGAAAAAAAAGAGATTTTATTTCTCGATGGAAAAAAATGCAAAAAGAAGGTGTAGCAAATACTAGTTTGAATTCCTATGGATTTTTCGCTTATGATACAGTTTGGATAGTTGCACATTCAATTGAGAAATTTCTGAAAGTGCACGACAATATTACTTTTTCGCTTCGTGACAACAATATGGTACCTCATACAGAAGGAATTGGTATTCAGCTTGAGAAGCTCAAAATCTTTGCCAATGGATCTGATTTTGTTAACATATTATCACTATCAAATTTTAGCGGTGTGAGTGGTAAAATTCAGTTTAGTTCAAACAGAAATGTCATTAGTAGTGGTTATGATGTTATCAATATCAATCAGATGAAAATTAATAGGGTTGGTTATTGGTCTAATCATTCAGGATTTTCGGTTGTTCCCCCCGAAGTTCTTGCGAAAAAGAAACATCCTAGGGTTTCCGTAGATCAGAAGCTTGACAATATTACTTGGCCAGGTGGAAAAACAGAAAGACCGCGCGGATGGGTGATTGCGGATAATGCAAAGCCACTGAGAATTGGAGTGCCGAGGAGAGCTAGTTTCGTTGAATTTGTAACTGAACTGAAAGATAGTCATAAGATTCAAGGGTATTGTATCGATATCTTCATGAAAGCCTTGGAATTTATTCCGTATGAAATTCCTTTTGTATTCAAACCTGTTGGGAATGGTAAAGCAAATCCAAATTATGATGCACTTGTCAAAAAGATTGACGAAAATGTATATGATGCAGTTGTTGGAGACATTGCGATTGTGACAAACCGAACAAAGATTGCGGATTTTTCTCAACCTTTTGCATCATCTAGCCTTGTTATAGTGGCTCCTATCAACAGTTCAAAATCAAATGCTTGGGTATTCCTCAAACCATTCTCACCAGATATGTGGTGTATCATTGCTGCATCATTTCTAATGATTGGAGTTGTTATATGGATTCTTGAACACCGAGTCAACGATGAGTTCCGTGGTCCTCCTAAGAGACAACTTGTCACAATGTTTATGTTCAGCCTCTCGACACTCTTTAAGACAAATAATAATACCGTAAGCTCGCTTTCTAAAATGGTGTTGATAGTATGGCTTTTCCTACTGATGGTGATAACAGCTAGCTATACAGCAAGCTTGACGTCAATTCTCACAGTGGAACAGCTTTCATCGCCGATCACAGGAATCGATAGCTTGATTGCAAGTAACTGGCCTATTGGATACCAAGTAGGATCGTTTGCTTACAGCTATCTGACAGATAATCTTTATGTATCAAGATCAAGACTTGTTTCCTTAGGCTCCCCCGAGGAATATGCGGTAGCACTTCGGAATGGACCGTCTGGTGGTGGTGTAGCAGCTATCGTCGATGAGCTTCCGTATGTGGAATTGTTTCTGTCAAAAGAAACTGAATTCGGTATTATCGGTCAGCCATTTACCAGAAGTAGTTGGGGATTTGCTTTTCAAAGAGATTCCCCTCTTGCACTTGACATGTCAACTGCAATATTGAAACTAGCCGAGAGTGGAGAGCTTCAAAAGATACATGAGAAATGGTTTTGCAAGATGGGTTGTCCCGGCGAAAGGAAAAGCAACCCTAAACCAGACCAACTTCATCTGATCAGCTTTTGGGGTCTATATCTGTCGTGCGCTGTCATCTCTGTCGTCGCACTTGTTTTGTTTCTGCTGCGAATGATTAGCCAATATGTTGGCTTCAAACAAAGGCAAAAGGACATTGCTGCTCCATCCTCGGAACAATCGAAAAGTCATTGTTCCCGAGTTGTTGTTAATTTCTTTAACTTCATTGATAAAAAGGAAGATGCCATCAAGAAAATGTTCACTCAATGTGACAATCCTCATAACCCCAACTGA 2736 0.3936 MKQFMVLYLMIWIWVIFFCGIVHSERPESVNIGAVFTFDSVIGRVAKAAMEMAVSDVNSDQTVLNGTKLNLIMKDGMCNAFLGSTGAFQVLEQGVAAIIGPQSSAIAHSISQIADAVKVPLISYAATDPTLSSLQFPLFFRTVQSDSEQMAAMANLIDFNGWKEVIVVFLDDDYGRNGVSVLSDELENRRLKISHKLALSIHFDLDEITKLLNQSKVFNPRVFVVHINPDPRLRIFSVAHKLQMMTSEYVWLVTDWFAATLHSFLPMNQKSLSVVEGVVGLRQHIPDSRKKRDFISRWKKMQKEGVANTSLNSYGFFAYDTVWIVAHSIEKFLKVHDNITFSLRDNNMVPHTEGIGIQLEKLKIFANGSDFVNILSLSNFSGVSGKIQFSSNRNVISSGYDVININQMKINRVGYWSNHSGFSVVPPEVLAKKKHPRVSVDQKLDNITWPGGKTERPRGWVIADNAKPLRIGVPRRASFVEFVTELKDSHKIQGYCIDIFMKALEFIPYEIPFVFKPVGNGKANPNYDALVKKIDENVYDAVVGDIAIVTNRTKIADFSQPFASSSLVIVAPINSSKSNAWVFLKPFSPDMWCIIAASFLMIGVVIWILEHRVNDEFRGPPKRQLVTMFMFSLSTLFKTNNNTVSSLSKMVLIVWLFLLMVITASYTASLTSILTVEQLSSPITGIDSLIASNWPIGYQVGSFAYSYLTDNLYVSRSRLVSLGSPEEYAVALRNGPSGGGVAAIVDELPYVELFLSKETEFGIIGQPFTRSSWGFAFQRDSPLALDMSTAILKLAESGELQKIHEKWFCKMGCPGERKSNPKPDQLHLISFWGLYLSCAVISVVALVLFLLRMISQYVGFKQRQKDIAAPSSEQSKSHCSRVVVNFFNFIDKKEDAIKKMFTQCDNPHNPN 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03920 911 FunFam Glutamate receptor 580 717 - -
Trre11g03920 911 SUPERFAMILY Periplasmic binding protein-like I 26 461 IPR028082 -
Trre11g03920 911 FunFam Glutamate receptor 464 580 - -
Trre11g03920 911 Pfam Ligand-gated ion channel 809 839 IPR001320 GO:0015276|GO:0016020
Trre11g03920 911 Gene3D - 48 397 - -
Trre11g03920 911 FunFam Glutamate receptor 705 812 - -
Trre11g03920 911 CDD PBP1_GABAb_receptor_plant 31 426 IPR044440 -
Trre11g03920 911 Gene3D - 145 422 - -
Trre11g03920 911 Pfam Receptor family ligand binding region 47 406 IPR001828 -
Trre11g03920 911 SUPERFAMILY Periplasmic binding protein-like II 448 808 - -
Trre11g03920 911 CDD GluR_Plant 467 808 - -
Trre11g03920 911 SMART GluR_14 470 810 IPR001320 GO:0015276|GO:0016020
Trre11g03920 911 Pfam Bacterial extracellular solute-binding proteins, family 3 485 808 IPR001638 -
Trre11g03920 911 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 43 59 - -
Trre11g03920 911 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 234 257 - -
Trre11g03920 911 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 103 131 - -
Trre11g03920 911 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 857 IPR015683 -
Trre11g03920 911 Gene3D - 580 709 - -
Trre11g03920 911 FunFam Glutamate receptor 145 308 - -
Trre11g03920 911 PIRSF IGluLR_plant 1 910 IPR017103 -
Trre11g03920 911 Gene3D - 461 579 - -
Trre11g03920 911 Gene3D - 757 815 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03920 Trre-Chr11 52446875 52451766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03920 25 909 Ion Channels AT2G32400 55.331 0.0 1021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03920 K05387 - gmx:100784247 1453.73