Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03900 ATGGAGTGGACTAGAGGCAACATCATAGGACATGGCTCATCCGCCACCGTCTACCTCGCCACTTCTCGCACCTCCACCGATGTCTCCGCCGTGAAATCCGCGGAGACAACATTATCAAACTCGAAACAACTCCAAAGAGAACAGAGAATTCTTTCTTCTTTGTCCTCTCCTTATATAGTTAAGTATAAAGGTTGCAATATTACAAAGGAAAATAAGAAGAAATTGTTCAATCTTTTCATGGAGTATATGCCCTTTGGAAACCTATCTCAGGCGACTCACGGTGGCCGGCTCAACGAGGCGACGATAGCACACTACACAAGACAAATTTTGGAAGGACTTGAATATTTGCATTCAAAAGGTATTGTGCATTGTGATATCAAAGGTAGTAACATATTGGTTTGTGAAAAAGGAGTTAAAATTGGAGATTTTGGTTGTGCAAAAATGATCGATGAAATTGCGCCGGTCGCCGGAACTCCATTGTATATGGCGCCGGAAGTGGCGCGCGGCGAAGAACAAGGGTACCCTTGTGATGTTTGGTCACTTGGATGCACAATTGTTGAAATGGCAACTGGTTTTTCACCTTGGTCCAATGTAGATGACCCTGTTCATGTTCTGTTTCGTGTTGCATATTCCAATGAAGTTCCTATGATTCCTTGTTTTTTGTCTGAACAAGCTAAGGATTTCTTGGAAAAATGTTTTATGAGAAATTCTAATGAGAGATGGAGTTGTAGTCAATTGTTGAAACATCCATTTCTTGCTGAATTTGATTCTGGTGTTGAGAAAATTCAAGAATTTGATACATGTTCACCAACTAGTATTCTTGAACAAGGCTTTTGGAATTGTGATGAAGATTCAGAAAGTTTATTTTTTGATGATTTGGGTAAGAATAGTTTTGTGAATTGTCCTATTGAAAGAATAAAAAAGTTAACTTTATGTTCAAGGGATAATCCATGTTGGAAATGGTGTGATGAGAATTGGATCACAATTAGAGGGAATGATGCAGAAGCAGAGGTTTCAATTAGTGATGATTTAGATAAAAGTGATTTTAGTGATAGAATTAGTGGTGATTATTTTTGTGAGGATTATAATAATTATAAGATTAGGGATGTTAGTTTTTTAGTTAATAGTCTTAATTTTGAGAGAGGCATTGGAAGGTTGATGCATCATTCAACATTAGATTTTTTATAA 1188 0.3729 MEWTRGNIIGHGSSATVYLATSRTSTDVSAVKSAETTLSNSKQLQREQRILSSLSSPYIVKYKGCNITKENKKKLFNLFMEYMPFGNLSQATHGGRLNEATIAHYTRQILEGLEYLHSKGIVHCDIKGSNILVCEKGVKIGDFGCAKMIDEIAPVAGTPLYMAPEVARGEEQGYPCDVWSLGCTIVEMATGFSPWSNVDDPVHVLFRVAYSNEVPMIPCFLSEQAKDFLEKCFMRNSNERWSCSQLLKHPFLAEFDSGVEKIQEFDTCSPTSILEQGFWNCDEDSESLFFDDLGKNSFVNCPIERIKKLTLCSRDNPCWKWCDENWITIRGNDAEAEVSISDDLDKSDFSDRISGDYFCEDYNNYKIRDVSFLVNSLNFERGIGRLMHHSTLDFL 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03900 395 CDD STKc_MAPKKK 2 252 - -
Trre11g03900 395 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 290 - -
Trre11g03900 395 FunFam Mitogen-activated protein kinase kinase kinase 17 2 305 - -
Trre11g03900 395 Pfam Protein kinase domain 5 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g03900 395 SUPERFAMILY Protein kinase-like (PK-like) 3 273 IPR011009 -
Trre11g03900 395 Gene3D Transferase(Phosphotransferase) domain 1 2 287 - -
Trre11g03900 395 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Trre11g03900 395 SMART serkin_6 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g03900 395 ProSiteProfiles Protein kinase domain profile. 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g03900 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03900 Trre-Chr11 52216757 52217944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03900 1 309 MAP Kinase Kinase Kinase AT2G32510 50.453 1.79e-109 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre11g03900 Pkinase 8.6e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03900 K20716 - gmx:100797801 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03900 11 52216757 52217944 Trre11g03900 11 52216757 52217944 ECH
Trre11g03900 11 52216757 52217944 Trre7g01343 7 9764959 9766134 PCT