Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03881 ATGGCCGAGGTTCCTGTGATTGAAGAGAATGAAACAAAGTCTGAAGCACATTTGACTTCTGCTGCTGCTTTTGTGGAAGGTGGAATTCAGGATGCTTGTGATGATGCTTGCAGTATATGCCTTGAAGCTTTTATTGATAGTGATCCTTCAACGGTGACAAGTTGCAAGCATGAGTTTCATCTTCAATGTATTCTAGAATGGTGTCAAAGGAGTTCCCAGTGCCCCATGTGTTGGCAATCTATCAGTCTAAAGGATCCAACAGGCCAGGAATTGCTCGAGGCAGTTGAGAGTGAGAGGAACATTAGGGTCAATCCATCTAGAAATGCTACAATATTTCATCATCCAACACTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCAAATGATGCTGATCTTGAAGAGCGTATAATCCAGCACTTAGCTGCTGCAGCAGCAATGGGGCGAGCACGCCATATTGCCAGAAGGGAAGGCCAGAGAAATAGGTCATCAGCTCAAGGTCGCCCACAGTATTTGGTATTTTCAGCTCATCCTAATTCACCTCCCATGGCTCCTGCTTCTTCCTCTCCACCCCAGAGAGGGGATGGTGAATCAACTCCTGCTATCAATCTATCTCCAACTTTTTCGACTGGAGAAGAACCACCACAGCTTACTTTAGTTCACCCAGTTCAAACTGACCAGGTCTCGGGATCCGGGTCCACAGCTCTTGCTACTGACAATCAGGGATTATCTTATAACAACAGGAGATCTCCTAATCAGTCTTCTCCGAGTAGCCAAGACAGAGCAGGACCATCAGATCTTCAGTCATTTTCAGAATCTCTGAAATCAAAACTAAATGCCGTGTCTACAAGATACAAAGAGTCAATTTCCAAGAGCACAAGAGGTTGGAAGGAAAGGTGGTTCTCACGGAACAGCTCTGTAACTGATCTTGGATCTGAAGTTAGGAGAGAAGTTAATGCAGGGATTGCAACTGTGTCACGAATGATGGAACGCTTGGAGACCAGAGACAATAATAGAGCCAGTAGCAATTCTTCTCCAAGTCATTCAGAGGATGCACATAGAAGGACTTACTTGAACTCCGATCTGTTTTGTCCTAAAGTTAGGAATAGAGTTGACCATTACTGGATTGAAATTCCGTGGATGTGGTGCATTGCCTATTGGCTGGCGCAGAAGTGA 1179 0.4495 MAEVPVIEENETKSEAHLTSAAAFVEGGIQDACDDACSICLEAFIDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQSISLKDPTGQELLEAVESERNIRVNPSRNATIFHHPTLGDFELQHLPVGANDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPQYLVFSAHPNSPPMAPASSSPPQRGDGESTPAINLSPTFSTGEEPPQLTLVHPVQTDQVSGSGSTALATDNQGLSYNNRRSPNQSSPSSQDRAGPSDLQSFSESLKSKLNAVSTRYKESISKSTRGWKERWFSRNSSVTDLGSEVRREVNAGIATVSRMMERLETRDNNRASSNSSPSHSEDAHRRTYLNSDLFCPKVRNRVDHYWIEIPWMWCIAYWLAQK 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03881 392 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 14 86 - -
Trre11g03881 392 Pfam Ring finger domain 36 77 IPR001841 -
Trre11g03881 392 MobiDBLite consensus disorder prediction 192 275 - -
Trre11g03881 392 SUPERFAMILY RING/U-box 30 84 - -
Trre11g03881 392 MobiDBLite consensus disorder prediction 174 275 - -
Trre11g03881 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 86 IPR013083 -
Trre11g03881 392 SMART ring_2 37 77 IPR001841 -
Trre11g03881 392 MobiDBLite consensus disorder prediction 334 353 - -
Trre11g03881 392 ProSiteProfiles Zinc finger RING-type profile. 37 77 IPR001841 -
Trre11g03881 392 FunFam E3 ubiquitin-protein ligase RHF2A 8 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03881 Trre-Chr11 52078759 52082305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03881 34 85 C3H Transcription Factor Family AT5G15790 44.231 1.27e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03881 K19043 - gmx:100780275 563.918