Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03878 ATGTCAATGGATATGAATATGATGGGAAATGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACTACTCTAGCGGTTAGTGTTCCATGCAGTAGCTTGTTGACTATAGTGACAGTTAGATGTGGACATTGTGCTAATTTGCTTTCAGTTAACATGGGAGCAGCTTCACTTCAATCTTTTCCTCCTCAACAAGAACATCATCATCATCATCCTCAGTTTCAGAAACAGCAGCTTGTAAACTGTCATCAAGAAGAAAGTAGGAAGGAAGTTGTAGGATCATCATCTTCTTCTTCTTCTTCTTCATCTTCAAAATCCAAAGCTTTTCAGCATTTAGTCCATGAGCAACCTAGGACTCCTCCGATTCGTCCTCCCGAGAAGAGACAACGTGTTCCTTCCGCTTACAATCGGTTCATTAAGGAGGAAATACAAAGAATTAAGGCTGGTAATCCAGATATAAGTCACAGGGAAGCATTTAGCACAGCAGCTAAAAACTGGGCACATTTTCCTCACATTCACTTTGGATTAAAGTTGGATGCTAGCAAGCAAGCAAAATTGGACCATGGGGTTGGAGAGGCTACTCAAAAGTCTAATGGATTTTATTGA 606 0.4043 MSMDMNMMGNERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGAASLQSFPPQQEHHHHHPQFQKQQLVNCHQEESRKEVVGSSSSSSSSSSSKSKAFQHLVHEQPRTPPIRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSTAAKNWAHFPHIHFGLKLDASKQAKLDHGVGEATQKSNGFY 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03878 201 Gene3D High mobility group box domain 113 186 IPR036910 -
Trre11g03878 201 Pfam YABBY protein 10 176 IPR006780 GO:0007275
Trre11g03878 201 FunFam Axial regulator YABBY 121 191 - -
Trre11g03878 201 MobiDBLite consensus disorder prediction 85 131 - -
Trre11g03878 201 MobiDBLite consensus disorder prediction 91 110 - -
Trre11g03878 201 SUPERFAMILY HMG-box 116 169 IPR036910 -
Trre11g03878 201 CDD HMG-box_SF 130 166 - -
Trre11g03878 201 PANTHER PROTEIN YABBY 6-RELATED 7 185 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03878 Trre-Chr11 52040173 52048305 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03878 1 201 C2C2-YABBY Transcription Factor Family AT1G08465 61.084 1.47e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Trre11g03878 YABBY 2.6e-73 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03878 K25796 - gmx:100785458 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03878 11 52040173 52048305 Trre7g01365 7 9930334 9937471 PCT