Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03877 ATGTCAATGGATATGAATATGATGGGAAATGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACTACTCTAGCGGTTAGTGTTCCATGCAGTAGCTTGTTGACTATAGTGACAGTTAGATGTGGACATTGTGCTAATTTGCTTTCAGTTAACATGGGAGCAGCTTCACTTCAATCTTTTCCTCCTCAACAAGAACATCATCATCATCATCCTCAGAAACAGCAGCTTGTAAACTGTCATCAAGAAGAAAGTAGGAAGGAAGTTGTAGGATCATCATCTTCTTCTTCTTCTTCTTCATCTTCAAAATCCAAAGCTTTTCAGCATTTAGTCCATGAGCAACCTAGGACTCCTCCGATTCGTCCTCCCGAGAAGAGACAACGTGTTCCTTCCGCTTACAATCGGTTCATTAAGGAGGAAATACAAAGAATTAAGGCTGGTAATCCAGATATAAGTCACAGGGAAGCATTTAGCACAGCAGCTAAAAACTGGGCACATTTTCCTCACATTCACTTTGGATTAAAGTTGGATGCTAGCAAGCAAGCAAAATTGGACCATGGGGTTGGAGAGGCTACTCAAAAGTCTAATGGATTTTATTGA 600 0.405 MSMDMNMMGNERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGAASLQSFPPQQEHHHHHPQKQQLVNCHQEESRKEVVGSSSSSSSSSSSKSKAFQHLVHEQPRTPPIRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSTAAKNWAHFPHIHFGLKLDASKQAKLDHGVGEATQKSNGFY 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03877 199 MobiDBLite consensus disorder prediction 64 88 - -
Trre11g03877 199 Pfam YABBY protein 10 174 IPR006780 GO:0007275
Trre11g03877 199 Gene3D High mobility group box domain 111 184 IPR036910 -
Trre11g03877 199 MobiDBLite consensus disorder prediction 89 108 - -
Trre11g03877 199 CDD HMG-box_SF 128 164 - -
Trre11g03877 199 MobiDBLite consensus disorder prediction 60 129 - -
Trre11g03877 199 FunFam Axial regulator YABBY 119 189 - -
Trre11g03877 199 PANTHER PROTEIN YABBY 6-RELATED 7 183 IPR006780 GO:0007275
Trre11g03877 199 SUPERFAMILY HMG-box 114 167 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03877 Trre-Chr11 52040173 52048305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03877 1 199 C2C2-YABBY Transcription Factor Family AT1G08465 61.386 2.91e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Trre11g03877 YABBY 1.7e-73 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03877 K25796 - gmx:100785458 265.774