Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03873 ATGTTTGGAAGAGCACCTAAGAAAAGCGATAACACCAAATACTATGAAATTCTTGGCGTTTCCAAAAGCGCTTCTCCTGATGATTTGAAGAAAGCTTACAAGAAAGCTGCTATCAAGAATCATCCTGATAAGGGTGGCGATCCTGAAAAGTTCAAAGAGCTTGCACAAGCTTATGAGGTTTTGAGTGATCCTGAGAAGCGTGAGATATATGATCAGTATGGTGAAGATGCCCTTAAGGAAGGAATGGGTGGTGGCGGCGGTGGCCATGATCCATTTGATATCTTTTCGTCTTTCTTTGGTGGAGGTGGTTTTCCAGGTGGTGGTAGCAGAGGAAGGAGGCAGAGACGTGGTGAAGATGTTGTTCACCCTTTGAAGGTTTCTTTGGAGGATCTTTACCTTGGGACATCTAAGAAGCTTTCTCTTTCGAGGAATGTCTTGTGCTCAAAGTGCAATGGGAAAGGGTCGAAATCTGGGGCTTCGATGACTTGTGCTGGTTGTCAAGGTTCTGGTATGAAGGTTTCTATGAGGCATCTGGGTGCTAATATGATTCAGCAAATGCAACATCCTTGCAATGAATGTAAGGGTACTGGAGAGACAATCAATGACAAAGATCGATGCACACAGTGCAAGGGAGAGAAGGTTGTTCAACAGAAGAAAGTCCTTGAAGTTCATGTGGAGAAGGGAATGCAAAATAGTCAGAAGATTACATTCCCTGGTGAAGCTGATGAAGCACCGGATACAATCACCGGAGATATTGTCTTTGTACTTCAACAGAAGGAACATCCCAAATTCAAGAGAAAGGGCGAAGATCTTTTTGTAGAGCACACATTGTCGCTCACAGAGGCTCTATGCGGTTTCCAATTTGCACTTACTCATTTGGATTCCCGGCAACTCTTGATTAAATCAAACCCTGGAGAAGTTGTTAAGCCTGATTCATACAAGGCAATCAATGATGAAGGAATGCCAATGTACCAGAGGCCTTTCATGAAGGGCAAGCTTTACATTCACTTCAATGTAGAGTTCCCTGAGTCTTTGACTCCTGAACAGGTTAAGGCTTTGGAGACTATTCTTCCAGCAAGGCCTTCATCACAGTTAACAGACATGGAGCTGGATGAATGTGAGGAGACAACACTTCATGATGTTAACATTGAAGAAGAGTCAAGGAGGAGGCAACAAGCTCAGCAGGAAGCATATGATGAGGATGATGATATGCCTGGTGGTGCTCAAAGAGTACAGTGTGCTCAGCAGTAA 1251 0.4388 MFGRAPKKSDNTKYYEILGVSKSASPDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFSSFFGGGGFPGGGSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVLCSKCNGKGSKSGASMTCAGCQGSGMKVSMRHLGANMIQQMQHPCNECKGTGETINDKDRCTQCKGEKVVQQKKVLEVHVEKGMQNSQKITFPGEADEAPDTITGDIVFVLQQKEHPKFKRKGEDLFVEHTLSLTEALCGFQFALTHLDSRQLLIKSNPGEVVKPDSYKAINDEGMPMYQRPFMKGKLYIHFNVEFPESLTPEQVKALETILPARPSSQLTDMELDECEETTLHDVNIEEESRRRQQAQQEAYDEDDDMPGGAQRVQCAQQ 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03873 416 CDD DnaJ 14 63 IPR001623 -
Trre11g03873 416 CDD DnaJ_C 118 345 - -
Trre11g03873 416 SUPERFAMILY HSP40/DnaJ peptide-binding domain 264 353 IPR008971 GO:0006457|GO:0051082
Trre11g03873 416 Pfam DnaJ C terminal domain 121 342 IPR002939 -
Trre11g03873 416 SUPERFAMILY Chaperone J-domain 8 109 IPR036869 -
Trre11g03873 416 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Trre11g03873 416 FunFam Chaperone protein dnaJ 3 214 254 - -
Trre11g03873 416 CDD DnaJ_zf 147 213 IPR001305 GO:0031072|GO:0051082
Trre11g03873 416 Gene3D - 261 343 - -
Trre11g03873 416 MobiDBLite consensus disorder prediction 377 397 - -
Trre11g03873 416 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Trre11g03873 416 Gene3D - 147 213 - -
Trre11g03873 416 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 144 216 IPR036410 -
Trre11g03873 416 SUPERFAMILY HSP40/DnaJ peptide-binding domain 118 262 IPR008971 GO:0006457|GO:0051082
Trre11g03873 416 SMART dnaj_3 12 66 IPR001623 -
Trre11g03873 416 FunFam dnaJ protein homolog 10 109 - -
Trre11g03873 416 Gene3D - 110 259 - -
Trre11g03873 416 MobiDBLite consensus disorder prediction 377 416 - -
Trre11g03873 416 Gene3D DnaJ domain 10 109 IPR036869 -
Trre11g03873 416 FunFam DnaJ subfamily A member 2 147 213 - -
Trre11g03873 416 FunFam DnaJ subfamily A member 2 261 343 - -
Trre11g03873 416 Pfam DnaJ central domain 147 213 IPR001305 GO:0031072|GO:0051082
Trre11g03873 416 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 11 397 IPR044713 GO:0006457|GO:0030544
Trre11g03873 416 PRINTS DnaJ domain signature 46 66 IPR001623 -
Trre11g03873 416 PRINTS DnaJ domain signature 15 33 IPR001623 -
Trre11g03873 416 PRINTS DnaJ domain signature 66 85 IPR001623 -
Trre11g03873 416 Pfam DnaJ domain 13 71 IPR001623 -
Trre11g03873 416 Hamap Chaperone protein DnaJ [dnaJ]. 10 368 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Trre11g03873 416 ProSiteProfiles Zinc finger CR-type profile. 134 218 IPR001305 GO:0031072|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03873 Trre-Chr11 51991819 51993863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03873 14 73 C2H2 Transcription Factor Family AT1G74250 44.928 5.00e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03873 K09503 - twl:119980998 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03873 11 51991819 51993863 Trre11g03873 11 51991819 51993863 ECH
Trre11g03873 11 51991819 51993863 Trre7g01371 7 9978339 9981387 PCT