Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03870 ATGGATGTTGATTCTTCGATGGTTCCAGAGGCTGATCATGATCCTATTGTGGGGAATGCTTCTCCGGCGCGGGAGGTTGTAGAAGGAGAGCAGATTAAGGAACAACCGGCGACGGAGTCCGGTGGTGGATCTCAGGCGGAGGTGCAGCAACAGCAAGGGACGAATGATGTGCAACAAGGTACGGTTGTTGGACCGAGGTTGGCGCCGAATTACACTGTGGTGAATGCGATTTTGGAGAAGAAGGAGGACGGTCCAGGGCCGAGGTGTGGACATACGTTGACGGCGGTTGCGGCTGTTGGTGAGGAGGGTACGCCTGGGTATATTGGTCCTAGGTTGATTTTGTTTGGTGGTGCTACTGCACTTGAAGGAAATTCTGCGGCTTCGGGGACTCCTTCATCAGCTGGAAATGCTGGAATACGTTTGGCTGGTGCCACGGCTGATGTCCACTGTTATGATGTCTTGACTAATAAATGGTCTAGGCTAACTCCCTATGGAGAACCTCCAACACCAAGGGCTGCCCATGTGGCAACTGCCGTGGGAACCATGGTGGTTATTCAGGGTGGTATTGGTCCTGCTGGTTTGTCGGCAGAAGACCTTCATGTTCTTGATCTCACGCAGCAATGGCCCCGATGGCATAGAGTGTCTGTTCAAGGCCCCGGACCAGGGTCACGCTATGGACATGTAATGGCTTTGGTTGGCCAGCGGTATCTTATGGCAATCGGAGGCAATGATGGAAAGAGACCTTTGGCTGATGTATGGGCTTTGGACACAGCTGCTAAGCCATATGAGTGGCGCAAGTTAGAGCCAGAAGGAGAGGGTCCTCCTCCATGCATGTATGCAACTGCAAGTGCACGATCTGATGGGCTTCTTCTGCTTTGTGGAGGGAGGGATGCCAATAGTGTTCCATTGGTTAGTGCATATGGACTTGCTAAGCATAGAGACGGTCGTTGGGAATGGGCAATTGCCCCAGGTGTCTCACCATCTCCAAGATATCAGCATGCAGCGGTATTTGTTAATGCAAGGCTGCATGTGTCTGGTGGAGCTCTTGGTGGAGGACGGATGGTTGAAGACTCATCAAGTGTTGCAGTATTGGACACTGCTGCTGGTGTTTGGTGTGATACAAAATCTGTTGTTACCACTCCAAGAACTGGTAGATACAGTGCCGATGCAGCTGGTGGAGACGCGGAAGTTGAGTTGACTCGACGTTGTAGGCATGCAGCTGCTGCTGTTGGTGACCTGATTTTTATTTACGGTGGTTTACGTGGGGGAGTCTTGTTGGATGACCTACTTGTTGCCGAAGATCTTGCTGCTGCTGAAACAACAACTGCTGCTTCACATGCTGCTGCAGCAGCAGCTTCATCCAATGTACAAGCAGGACGCTTGCCTGGACGATATGGATTTGATGATAGGCCAAGGCAAACAATGACTGAAGTGGCTGCTGATGGTTCTGTTGTATTGGGAAATCCAGTTGCACCCCCAATGAATGGCGACATTTATACTGACATTAGCACTGAAAATGCCATACTTCAGGGACCTCGTAGAACTGCCAAAGGAGTTGAGTATCTGGTGGAAGCATCTGCTGCAGAAGCCGAAGCTATTAGTGCCGCACTGGCTGCTGCCAAGGCAAGGCAAGAGAATGGAGAAGTTGAATTACCTGACAGAGACCGTGGGGCTGAGGCTACTCCAAGTGGGAAGCACACATCTTCCTTGATTAAGCCTGACTCTGTAGGGTCAAATAACAGTGCTTCTGGCGGAGTTCGGCTGCATCACAGAGCTGTAGTTATTGCTGCAGAGACTGGTGGAGCATTAGGTGGCATGGTTCGACAGCTTTCGATTGATCAATTTGAAAACGAAGGCAGGCGGGTCAGTTATGGGACTCCGGAAAATGCAACTGCTGCTAGAAAATTATTAGATCGGCAGATGTCCATCAATAGTGTGCCAAAAAAGGTTATAGCACACCTCTTAAAGCCTCGTGGATGGAAACCACCAGTACGCCGACAATTTTTCTTAGATTGTAATGAAATTGCCGATCTTTGTGATAGTGCTGAGCGGATATTTTCAAGTGAACCAAGTGTCTTACAACTTAGTGCACCGATTAAAATATTTGGTGATTTACATGGGCAGTTTGGGGATCTAATGCGCCTTTTTGATGAGTATGGTGCACCATCAACTGCTGGTGACATTGCATATATCGATTATCTATTCCTAGGAGATTATGTTGATCGGGGACAGCACAGCTTGGAAACTATAACCCTTCTTCTTGCTCTGAAGGTCGAGTATCCAAACAATGTACATTTAATACGTGGAAACCATGAAGCTGCAGATATTAATGCCCTTTTTGGTTTTCGAATCGAATGTATTGAGAGGATGGGTGAGAGAGATGGAATTTGGACGTGGCATCGGATTAACCGGCTGTTTAATTGGCTTCCTCTAGCTGCTTTAATTGAGAAAAAGATTATTTGCATGCATGGAGGTATTGGTCGTTCAATAAATCATATAGAACAGATTGAGAATATTCAGCGACCAATTCCAATGGAAGCGGGGTCAATTGTGCTTATGGATCTGTTGTGGTCTGATCCTACAGAGAATGATAGCGTAGAAGGACTGCGGCCAAATGCTAGAGGTCCTGGATTAGTTACTTTTGGTCCTGATCGAGTCATGGAATTTTGCAACAACAATGATCTTCAGCTAATTGTCCGTGCACATGAATGTGTGATGGATGGGTTTGAGCGTTTTGCCCAGGGACATCTGATCACACTTTTCTCAGCTACAAATTATTGTGGCACCGCAAATAATGCCGGAGCAATATTAGTTTTGGGTAGAGACCTTGTTGTGGTTCCAAAACTGATTCATCCATTACCACCTGCGATTTCCTCACCAGAAACGTCACCAGAAAGGCATATTGAAGATACATGGATGCAGGAGTTGAATGCTAACAGACCACCAACACCAACTAGAGGTCGCCCCCCAGTTGCAAATGACAGAGGTTCGCTCGCATGGATATAG 3006 0.4784 MDVDSSMVPEADHDPIVGNASPAREVVEGEQIKEQPATESGGGSQAEVQQQQGTNDVQQGTVVGPRLAPNYTVVNAILEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGNAGIRLAGATADVHCYDVLTNKWSRLTPYGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQWPRWHRVSVQGPGPGSRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSVPLVSAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTTPRTGRYSADAAGGDAEVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLAAAETTTAASHAAAAAASSNVQAGRLPGRYGFDDRPRQTMTEVAADGSVVLGNPVAPPMNGDIYTDISTENAILQGPRRTAKGVEYLVEASAAEAEAISAALAAAKARQENGEVELPDRDRGAEATPSGKHTSSLIKPDSVGSNNSASGGVRLHHRAVVIAAETGGALGGMVRQLSIDQFENEGRRVSYGTPENATAARKLLDRQMSINSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLSAPIKIFGDLHGQFGDLMRLFDEYGAPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWTWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHIEQIENIQRPIPMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPETSPERHIEDTWMQELNANRPPTPTRGRPPVANDRGSLAWI 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03870 1001 Gene3D - 41 302 IPR015915 GO:0005515
Trre11g03870 1001 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 1 1001 - -
Trre11g03870 1001 Gene3D - 312 461 IPR015915 GO:0005515
Trre11g03870 1001 MobiDBLite consensus disorder prediction 546 561 - -
Trre11g03870 1001 FunFam Serine/threonine-protein phosphatase 268 468 - -
Trre11g03870 1001 MobiDBLite consensus disorder prediction 1 64 - -
Trre11g03870 1001 PRINTS Serine/threonine phosphatase family signature 698 725 IPR006186 GO:0016787
Trre11g03870 1001 PRINTS Serine/threonine phosphatase family signature 804 830 IPR006186 GO:0016787
Trre11g03870 1001 PRINTS Serine/threonine phosphatase family signature 894 914 IPR006186 GO:0016787
Trre11g03870 1001 PRINTS Serine/threonine phosphatase family signature 733 760 IPR006186 GO:0016787
Trre11g03870 1001 PRINTS Serine/threonine phosphatase family signature 766 790 IPR006186 GO:0016787
Trre11g03870 1001 PRINTS Serine/threonine phosphatase family signature 916 932 IPR006186 GO:0016787
Trre11g03870 1001 MobiDBLite consensus disorder prediction 544 583 - -
Trre11g03870 1001 PIRSF STPPP_BSU1 34 1001 IPR012391 GO:0004721|GO:0009742
Trre11g03870 1001 ProSitePatterns Serine/threonine specific protein phosphatases signature. 767 772 IPR006186 GO:0016787
Trre11g03870 1001 SUPERFAMILY Metallo-dependent phosphatases 655 961 IPR029052 -
Trre11g03870 1001 Pfam Calcineurin-like phosphoesterase 698 905 IPR004843 GO:0016787
Trre11g03870 1001 MobiDBLite consensus disorder prediction 977 1001 - -
Trre11g03870 1001 MobiDBLite consensus disorder prediction 562 583 - -
Trre11g03870 1001 CDD MPP_Bsu1_C 650 952 IPR041758 -
Trre11g03870 1001 FunFam Serine/threonine-protein phosphatase 67 264 - -
Trre11g03870 1001 Pfam Kelch motif 329 375 IPR011498 GO:0005515
Trre11g03870 1001 Gene3D - 634 972 IPR029052 -
Trre11g03870 1001 MobiDBLite consensus disorder prediction 37 61 - -
Trre11g03870 1001 FunFam Serine/threonine-protein phosphatase 634 974 - -
Trre11g03870 1001 SMART pp2a_7 670 954 IPR006186 GO:0016787
Trre11g03870 1001 SUPERFAMILY Kelch motif 143 432 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03870 Trre-Chr11 51933631 51946940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03870 662 897 Calmodulin-binding Proteins AT5G63870 29.412 1.45e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03870 - - gmx:100790406 1798.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03870 11 51933631 51946940 Trre7g01376 7 10017777 10031997 PCT