Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03864 ATGGATGAAATTCATGTTCCTTCTCATTTTCTCTGCCCAATTTCCCTCCAACTTATGAAAGATCCTGTTACTCTTTCCACAGGAATTACCTACGACAGAGAAAACATAGAAAAATGGTTATTTTCATTCCAAAACAAAACATGTCCTGTTACAAAATCATCTTTATTAGAAACCGATCTTAATAATCTTACACCAAACCACACTCTTCGTCGTTTGATTCAATCTTGGTGTACCCTTAATGCTTCATTTGGTGTTGAACGTATTCCAACACCAAAATCACCAATAGATAGAACACAAATTCTTAAACTCATCAATGAAGCAAAGAAATTCCCAGAAAAACAACATAGTTGTCTTGTGAAGCTTCGTTCGATCGTCTTCGAAAGCGAAAGGAATAAAAAATGTTTGGAATCTGCAGGTGCAATAGAGTTTTTAGCTTCAACAATGAAGAACAACAATTCAAATTCAAGTTCTTTGAGTGAAGCTGCTATTGAAATTCTGTTTCATCTTAACCCTTCTGAAGTTCATATAAAGAGTTTGATAAACAATGAAAGCATTCAATTTATTGAATCATTGTTTCATGTTTTGAAGCTTGGAAGTTATCAATCTAGAGGTTATGCAACAATGCTATTGAAATCGGCGTTTGAAGTATCCAATCCGATTCAATTAATCAGCGTAAAAAAAGCGGTTTTCGAAGAATTAATGAGAGTGCTAATTGATAAGATTTCACAACAAGCTTCAAAAGCAGCATTGAAGTTAATTGTGGAGCTTTTACCGTGGGGGCGAAACCGAATTAAAGCGGTCGAAGGTGGCGCAGTTTTAGTCCTCATCGAGCTTCTTTTCGATGTTTCGGAAAGAAGGGCGTGCGAATTGATTTTGACAGGTTTGGATCAACTATGTGGTTGCGCCGAAGGGCGCGCGGAGTTGTTGAATCATGGTGCAGGTGTTGCTATTGTGTCAAAGAAAATTTTAAGGGTTTCTCATGTTGCAAGTGATAGAGGAGTTAGAATTTTGAGCTCAATTTGTAGATATTCAGCAAATTCTAGAGTTTTACATGAAATGTTGCAAGTTGGAGCTGTTTCAAAGTTGTGTTTGGTTCTTCAAGTTGATAGTAATTTTAAGACTAAAGAAAAAGCTAAGGAGATTCTCAAATTGCATGCTGCTGTTTGGAAGAATTCTACATGTATTCCTGTTCCTTTGTTATCTTCTTATCCATGA 1215 0.3613 MDEIHVPSHFLCPISLQLMKDPVTLSTGITYDRENIEKWLFSFQNKTCPVTKSSLLETDLNNLTPNHTLRRLIQSWCTLNASFGVERIPTPKSPIDRTQILKLINEAKKFPEKQHSCLVKLRSIVFESERNKKCLESAGAIEFLASTMKNNNSNSSSLSEAAIEILFHLNPSEVHIKSLINNESIQFIESLFHVLKLGSYQSRGYATMLLKSAFEVSNPIQLISVKKAVFEELMRVLIDKISQQASKAALKLIVELLPWGRNRIKAVEGGAVLVLIELLFDVSERRACELILTGLDQLCGCAEGRAELLNHGAGVAIVSKKILRVSHVASDRGVRILSSICRYSANSRVLHEMLQVGAVSKLCLVLQVDSNFKTKEKAKEILKLHAAVWKNSTCIPVPLLSSYP 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03864 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Trre11g03864 404 PANTHER WDSAM1 PROTEIN 3 396 IPR045185 GO:0061630
Trre11g03864 404 CDD RING-Ubox_PUB 7 60 IPR045210 -
Trre11g03864 404 SMART Ubox_2 9 76 IPR003613 GO:0004842|GO:0016567
Trre11g03864 404 ProSiteProfiles U-box domain profile. 5 83 IPR003613 GO:0004842|GO:0016567
Trre11g03864 404 Gene3D - 98 391 IPR011989 -
Trre11g03864 404 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Trre11g03864 404 SUPERFAMILY RING/U-box 4 80 - -
Trre11g03864 404 SUPERFAMILY ARM repeat 110 383 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03864 Trre-Chr11 51866344 51867558 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03864 2 404 U-box Gene Family AT2G35930 55.528 6.02e-160 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03864 - - gmx:100778012 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03864 11 51866344 51867558 Trre7g01378 7 10083428 10084618 PCT