Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03863 ATGAACGATCCTGTGACAACAATTACAGGCATAACATTCAACAGAGAAAGCATTGAACAATGGTTGCTAACATCAAAAAAATGCACATGTCCAATTACCAAACAACCCTTACCAAGAAGCTCAGATTTTTTGACACCAAACCATACCCTTCAAAGGTTAATTCAATCATGGCACTTACAAAATTCATCTATTAGTGTTGAAAAGATTATTCCAACCTCAACAATTGAAAAATTTGTTAAGAATCTTGATCATGAGTCATTAGAAAAATTGCTTGCTCTTGCTTTAGAAAATGAGAGAAATAGAACATGCATGGTTGAAGCAGGAGTAGCAAAAGCTATTATTCAAAAAGTGATTATAGATAATTTTTACAAGCAAGATTTATGTTGTTGTGCTGATGGAAGAGAACAATTTGTGCAACATGCAGCAGGAATTGCTTTGATTTCTAAAAGAACATTAAGGGTTTCATCAACAACTGATGATTGTGCTCTTCAAATATTTTGTTTAATTTCTAAATATTGTGCTACAAATGATGTTGTTCAAGAAATGTTAAGGGTTGGTGCTGTTTCAAAACTTTGTATGGTTATGCAAGCTGATTGTGGTTCTTATTTGAAGGAAAAAGCTAGAGGTGTTCTTAGGTTACACTCTAATGTATGGAATAATTCTCCTTGTATTCAAGTTTATTTGTTAACTAGACACCAAAGGTTTGGTGAGTGA 714 0.3291 MNDPVTTITGITFNRESIEQWLLTSKKCTCPITKQPLPRSSDFLTPNHTLQRLIQSWHLQNSSISVEKIIPTSTIEKFVKNLDHESLEKLLALALENERNRTCMVEAGVAKAIIQKVIIDNFYKQDLCCCADGREQFVQHAAGIALISKRTLRVSSTTDDCALQIFCLISKYCATNDVVQEMLRVGAVSKLCMVMQADCGSYLKEKARGVLRLHSNVWNNSPCIQVYLLTRHQRFGE 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03863 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 81 IPR013083 -
Trre11g03863 237 ProSiteProfiles U-box domain profile. 1 64 IPR003613 GO:0004842|GO:0016567
Trre11g03863 237 Pfam U-box domain 1 62 IPR003613 GO:0004842|GO:0016567
Trre11g03863 237 PANTHER WDSAM1 PROTEIN 1 116 IPR045185 GO:0061630
Trre11g03863 237 SUPERFAMILY RING/U-box 1 62 - -
Trre11g03863 237 SMART Ubox_2 1 57 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03863 Trre-Chr11 51859565 51860752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03863 99 224 U-box Gene Family AT3G52450 41.304 5.10e-33 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03863 - - hsyr:120188446 187.193