Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03861 ATGGCATGCCAAAAACTTAGCACTGGTAACTTGAATCCAAAGAGAAGTGGAGGATTAAGAACACAACAAGCAGGAAGAGGGTCATGCCGTGAAGTTTTGAAGACTTTGTGTGGTAGGAATCAATGGTCTTATGCTGTGTTTTGGAAGATTGGTTGCAACAATTCTAAGTTATTAATATGGGAAGACTGCTATTATGAACCTTTGTCATGTCCTTCCCCTAATGGCATTGTTGGGATGTCAAATTTTTCTAATCCGAACGGGGAAGGATGCTGGTTTTCATCTGAGTCTCAATCGTCTAATCTAGGAATACAAGAGGAGGATAGAGTCTCTTCTTTGATTAACAAAATGACAGTCAATAATTTAGTCATTGTTGCAGGTGAAGGTATAATTGGACGCGCTGCATTTACCAATAGTCATGAATGGATTCTCTTGAACAATTTTGCTAATGGTGCATATCCACCTGAGGTATATGCTGAAATGCATCACCAATTTTTAGCTGGAATGCAGACAGTAGCAGTAATTCCTGTGCTTCCTCACGGGGTTATTCAACTTGGTTCTTTCTTTCCGATAATGGAGAATATGGGATTTGTGCATGAAGTAAAGAGCCTGATCTTGCAACTAGGGTGTATTCCCAATGCCCTTCTATCCGAGGACTATTCAGCTAAACTTTCAAATGGAAGACTTGACGGACTTGCTACTTCCGGTGTGCCCGTTTCTGCTGATACATCAGTCATTACCTCAAATTCCACTCATTCAGTGGTTAATGGCTCCAACCAGCAAAGTTATTCATTTCATGCTTCAAACCCTATTGTTCAAAGACAGGGTAGAGTTGTGGAGGCTAAAGTAATACCCTCAAATTTTGATTCAAATCTGCAAAAGCATTCTGTTTCATATAACGGGAGATCTGAATTCAATAACTTTGCTGGTTCTGAGCCGTTTGGTCTATCAGGTCCAAGTGATCATAGCCTAAAATATATGGAACAACAAATCTTATCAGCAGTTGAGAGTCGAGATAATTTTAATCCTTGTATTAATGTGTCAAGTTCCTTAAACATTTCTCAACTAAAAACAGATGGAAGCCATAACGTTGGCCGTGGCAGTACTTCATTACTTAGAGGAATCCCAGTAAACGGTGGGATGAATCTGATTACTAGTTCAGAATCACTGAATGATAGTTCGAATTTGACTGGTCGATCAGGTGTCATCCACATGCCTCTAGAATGTTCTGATCAGAAGATTCTTCCCGAAGTTTCAAACTTTGCTTCAAGAGGTCAAAAGATAGCCTATGACATGCTTCAGGCTTCTAACAGCTCTTTTAATCCGGAGGAGCATGTGCCTATTAGTAGTCATATCCCTAGTTTTGCCGATGATTTCTTTCAGAAAGATGGTACTAATCAACCTAAGATGACAACGAATCCTAAACACGGAGAAGCTTGTGCTCAACAATCTCCATCAGGTGGTGACGACCTGTTTGATATTTTAGGTGTGGATTTTAAAAACAAACTTCTCAAAGGACACTGGAATGAACTGTTTGCTGATGAATCAGATGCCAGTGTTGAAAATGTGGATAAAAAGGAAATATGTACGAACAAAGAGGGTACAAATTCTGATTATTATTCAGCTAACAAATCAATGTTGGACAGTAGCATTTTTTCTGGCATGTCAACAGACCACCTCTTGGATGCTGTGGTCTCAAAGGCCAAACGTCCTTTGGTACATAATTCCGATGACATGTCTTGCAAGACAACATTGACCGGGAATAGTAGTGTCACCTCTATTCCCTCTCGTGTTTGCAAGCAGGTTATGTCCGGTAATTTTGAAGGAGATTTGTTTGGTTTTTCGAAGAATGGAGGTAAAACTGTTGCCTTAGAAACTAGTTCTCCAAGGTCTGGTTGTAGCAAGGATGATACCGGAAACCTTTCTCAAACGACTACTATATGTGGTTCTCAACTTAGCTCATGGTTGGAGAATGGTGGCAATGTGAAGCATGAAAAGCGTGAAAATAGTGTTTCAACTGGATACTCTAAGCGGCCAGATGAACCTTGCAAACCTAATCGGAAAAGGCTTAAACCAGGAGAAAATCCCAGGCCTAGACCTAAAGATCGTCAAATGATTCAAGATCGTGTCAAAGAGTTACGAGAGATTGTTCCAAATGGAGCGAAGTGTAGCATAGATGCACTGCTGGAACGGACTATTAAGCATATGGCTTTCTTGCAAAGTGTGACAAAGCACGCCGACAAGCTGAAACAGACCGGAGATTCTAAGATCGTTTGTAACGAAGGTGGGCTGCTTTTGAAAGACAATTTTGTGGGAGGGGCTACATGGGCATATGAGGTTGGCTCCCAATCAATGGTTTGTCCGATTAGAGTCGAAGATTTGAATCCTCCTCGTCAGATGCTAGTCGAGATGCTTTGCGAGGAACGGGGTTTCTTTCTAGAAATAGCTGACTTAATCAGAGGATTAGGCTTAACAATCTTGAAGGGCGTAATGGAAGCTCGCAACGACAAAATCTGGGCGCATTTTGTTGTTGAGGCAAACAGGGACGTAACGAGAATGGAAATATTTATGTCACTCGTTCGTCTTCTAGAGCAAACGATGAAGGGTAATGCGTCTTCATCGAATGCAATTGATGACATGATCGGTTACAACACTTCACCACAGAAGGCCTAA 2670 0.4112 MACQKLSTGNLNPKRSGGLRTQQAGRGSCREVLKTLCGRNQWSYAVFWKIGCNNSKLLIWEDCYYEPLSCPSPNGIVGMSNFSNPNGEGCWFSSESQSSNLGIQEEDRVSSLINKMTVNNLVIVAGEGIIGRAAFTNSHEWILLNNFANGAYPPEVYAEMHHQFLAGMQTVAVIPVLPHGVIQLGSFFPIMENMGFVHEVKSLILQLGCIPNALLSEDYSAKLSNGRLDGLATSGVPVSADTSVITSNSTHSVVNGSNQQSYSFHASNPIVQRQGRVVEAKVIPSNFDSNLQKHSVSYNGRSEFNNFAGSEPFGLSGPSDHSLKYMEQQILSAVESRDNFNPCINVSSSLNISQLKTDGSHNVGRGSTSLLRGIPVNGGMNLITSSESLNDSSNLTGRSGVIHMPLECSDQKILPEVSNFASRGQKIAYDMLQASNSSFNPEEHVPISSHIPSFADDFFQKDGTNQPKMTTNPKHGEACAQQSPSGGDDLFDILGVDFKNKLLKGHWNELFADESDASVENVDKKEICTNKEGTNSDYYSANKSMLDSSIFSGMSTDHLLDAVVSKAKRPLVHNSDDMSCKTTLTGNSSVTSIPSRVCKQVMSGNFEGDLFGFSKNGGKTVALETSSPRSGCSKDDTGNLSQTTTICGSQLSSWLENGGNVKHEKRENSVSTGYSKRPDEPCKPNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLERTIKHMAFLQSVTKHADKLKQTGDSKIVCNEGGLLLKDNFVGGATWAYEVGSQSMVCPIRVEDLNPPRQMLVEMLCEERGFFLEIADLIRGLGLTILKGVMEARNDKIWAHFVVEANRDVTRMEIFMSLVRLLEQTMKGNASSSNAIDDMIGYNTSPQKA 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03861 889 MobiDBLite consensus disorder prediction 659 704 - -
Trre11g03861 889 CDD bHLH_AtLHW_like 693 762 - -
Trre11g03861 889 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 30 203 IPR025610 -
Trre11g03861 889 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 689 738 IPR011598 GO:0046983
Trre11g03861 889 MobiDBLite consensus disorder prediction 1 23 - -
Trre11g03861 889 MobiDBLite consensus disorder prediction 657 704 - -
Trre11g03861 889 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 29 878 IPR043561 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03861 Trre-Chr11 51808818 51814800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03861 486 877 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 52.778 4.73e-110 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03861 - - cam:101492357 1157.9