Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03851 ATGGGAGTTATGTTGATAGAACAAGTTTCAAAATTGATACTTTTTTTTTCAATGATTACAATATGTTATAGTGCTACAAATCCTAATGATCTCAAAGTTTTGAATGATTTTAGAAAAGGGTTAGAAAATTCTGAGCTTTTGAAATGGCCAGAAAAAGGTAACAATGATCCATGTGGTCCTCCATCATGGCCTTATGTGTTTTGTTCTGATGATAGAGTTACTCAGATTCAAGCTAAGAATCTTGGACTTAGAGGAAAATTGCCACAAAATTTCAACCAACTCTCAGAACTCAACAATTTAGGTCTTCAACGAAACAATCTTACCGGAATGTTACCTAGTTTTCGTGGTTTATCGAAATTAGAATTCGCTTTCTTGGATTACAATTCATTTGATGCTATCCCTTTTGATTTCTTCAATGGATTAACAAGCCTTAGGGTTTTGTCTTTGGAAGAAAATCAACTCAATGTTAGTACTAATGGTTGGTCATTTCCTTCGGATTTGGAGAAATCGGCACAGTTGACCGATCTTTCGTTCGTCCATTGTAATTTGGTTGGATCTTTGCCTGATTTTCTAGGCACATTGCCATCTCTCACAAGTCTAAGGCTTTCGAACAATAAACTTTCCGGTACCATTCCGGCTACTTTTGCTCAATCTTCAATTCAGGTTCTTTGGTTGAATAATCAAGAAGGAGAAAGTGGTTTTACAGGTTCGATCGATGTTATTGCTTCGATGGTTTTCTTAACACAGATTTGGCTACATGGAAACAAATTCTCAGGTACAATTCCAAACAATATTGGAAATCTCACTTCCTTGAAAGAACTCAATCTCAATAGTAATCAAATTGTTGGGTTGATTCCAAAATCTTTAGCAGAAATGGACCTTGATTCGCTCGTTTTGAACAATAACATGCTTATGGGTCCGATACCGAAGTTTAAAGCTGCAAACTTTTCTTATGATGATAATCTCTTTTGTCAAACTGAGCCAGGACTTGAATGTTCTTTAGAAGTTACAGCACTGCTTGATTTTCTGAATAATCTGAATTATCCGTCGTTTCTGATTTCTGATTGGTCAGGTAATAAACCATGTACAAGTAGCACAGGACCATGGTTTGGATTAAGCTGCAACAATTCAAACACTGGTGTATCTATAATTAATCTACCAAAGCATAAGCTTAATGGTAGTTTAAGTCCTTCACTTGCTAAGTTAGATTCACTTCTTGAAATTAGGCTTGCTGGAAATAATATAACCGGTGCAGTTCCTAGTGATTTTACTAAATTGAAATCGTTGAGGTTGTTGGATTTAACCGATAATAATATTGATTCTCCTTTGCCGAATTTTCATGATGGTGTGAAAGTTATTACTGTTGGTAACCCCTTTCTAATTAATAATCAAACTGGAGGGAGTGTTAGTCCTACTATTAGTGGCCCGAGTTCGGAAAAAAACCCTTCGCATTCTCCATCTTCACCGAACCAGCCGGTTCCGAGCTCAAATCATAAAAAATTCAAGACAGTGGCAACAGTGGCTGGAATTGCAGGGTTTGCAGTTGTAGCTTTTTTTGTTGTTTATCTCTTTTTATGTTTCTTTAAAAACAAGAAAGCCTCGTCGAAAGCTCCAAGTTCCATCGTGGTTCACCCTCGAGATCTGTCTGATCGAGGAAGTGCAGTTAAAATTGCGGTTTCAAGCAACAACACTGGAAGCTTATCAGGAAAAACTAGGACAAGTTCTCTGAGTAACTTAAGTGGCGAAACTCAAAACTCTTGCTTAATTGAGGCTGGTAAGAATGTCATATCGGTGCAAGTTCTACGCAAGGTTACTAACGATTTCGCATCGGAAAATGAGCTAGGACGCGGTGGATTTGGGACTGTTTACAAAGGGGAATTAGAAGATGGAACCAATATAGCAGTAAAGAGAATGGAGAATGGAGTTATTGGCAATAAGGCTTTGGATGAGTTTCAATCAGAAATAGATGTTCTTTCTAAGGTTCGTCACCGACATTTGGTATCTCTTTTAGGGTATTCCATTGAAGGCAATGAGAGACTTTTAGTTTATGAATATATGCCATTTGGTGCTCTAAGTCAACATCTTTTTCATTGGAGAAAATTCGAGTTGAAGCCTTTATCTTGGTCACAAAGGCTTGTAATAGCACTAGATGTTGCTAGAGCGATGGAATATCTTCACGGTCTTGCTCGCGAGACCTTTATTCATAGAGATCTCAAGTCTTCTAATATTCTACTCGGCAATGATTTTCGTGCAAAAGTTTCGGATTTTGGTCTTGTGAAGCTTGCCCCGAATGGCGAAAAATCTATAGTAACCAAACTTGCCGGAACATTTGGTTACCTTGCCCCTGAATATGCTGTCATGGGGAAAATCACCACAAAAGTTGATGTGTTCAGCTACGGCGTTGTGTTAATGGAACTTCTAACCGGACTAACGGCGCTTGACGAGAGCCGGTCAGAGGAAATACGATACTTGGCCGGATGGTTTTGGCGAATTAAGTCAAACAAAGAAAAGCTTATGTCTGCCATTGATCCAGCTTTAGAACCAAATGAAGAAACATATGAAAGTATAACTATTGTAGCAGAACTTGCTGGACATTGTACTGCTAGGGAAGCATACCATAGGCCAGATATGAGTCACGCTGTCAATGTACTAGGAGCATTAGTGGAGAAATGGCGACCGGTTAACGATGAACTCGATTGCTATTCCGCAATTGACGGCACTCGACCACTTCCTCAATTGTTGAAAATTTGGAAGGATGCAGAAAGCAATGAGTTTAGCTATAGTTCTACTGCTAGTCTTGAAGACAGTAAAGGAAGTATTGCATTGAGGCCTGCTGGATTTGCTGATTCTTTCACTTCTAATGATGCTAGATGA 2874 0.3859 MGVMLIEQVSKLILFFSMITICYSATNPNDLKVLNDFRKGLENSELLKWPEKGNNDPCGPPSWPYVFCSDDRVTQIQAKNLGLRGKLPQNFNQLSELNNLGLQRNNLTGMLPSFRGLSKLEFAFLDYNSFDAIPFDFFNGLTSLRVLSLEENQLNVSTNGWSFPSDLEKSAQLTDLSFVHCNLVGSLPDFLGTLPSLTSLRLSNNKLSGTIPATFAQSSIQVLWLNNQEGESGFTGSIDVIASMVFLTQIWLHGNKFSGTIPNNIGNLTSLKELNLNSNQIVGLIPKSLAEMDLDSLVLNNNMLMGPIPKFKAANFSYDDNLFCQTEPGLECSLEVTALLDFLNNLNYPSFLISDWSGNKPCTSSTGPWFGLSCNNSNTGVSIINLPKHKLNGSLSPSLAKLDSLLEIRLAGNNITGAVPSDFTKLKSLRLLDLTDNNIDSPLPNFHDGVKVITVGNPFLINNQTGGSVSPTISGPSSEKNPSHSPSSPNQPVPSSNHKKFKTVATVAGIAGFAVVAFFVVYLFLCFFKNKKASSKAPSSIVVHPRDLSDRGSAVKIAVSSNNTGSLSGKTRTSSLSNLSGETQNSCLIEAGKNVISVQVLRKVTNDFASENELGRGGFGTVYKGELEDGTNIAVKRMENGVIGNKALDEFQSEIDVLSKVRHRHLVSLLGYSIEGNERLLVYEYMPFGALSQHLFHWRKFELKPLSWSQRLVIALDVARAMEYLHGLARETFIHRDLKSSNILLGNDFRAKVSDFGLVKLAPNGEKSIVTKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLTALDESRSEEIRYLAGWFWRIKSNKEKLMSAIDPALEPNEETYESITIVAELAGHCTAREAYHRPDMSHAVNVLGALVEKWRPVNDELDCYSAIDGTRPLPQLLKIWKDAESNEFSYSSTASLEDSKGSIALRPAGFADSFTSNDAR 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03851 957 Gene3D Ribonuclease Inhibitor 334 464 IPR032675 -
Trre11g03851 957 Gene3D Phosphorylase Kinase; domain 1 569 685 - -
Trre11g03851 957 FunFam receptor protein kinase TMK1 686 903 - -
Trre11g03851 957 SUPERFAMILY Protein kinase-like (PK-like) 588 884 IPR011009 -
Trre11g03851 957 Gene3D Transferase(Phosphotransferase) domain 1 686 901 - -
Trre11g03851 957 PANTHER OSJNBA0070M12.3 PROTEIN 12 957 - -
Trre11g03851 957 CDD STKc_IRAK 614 884 - -
Trre11g03851 957 ProSitePatterns Serine/Threonine protein kinases active-site signature. 733 745 IPR008271 GO:0004672|GO:0006468
Trre11g03851 957 SUPERFAMILY L domain-like 335 446 - -
Trre11g03851 957 SMART LRR_typ_2 268 291 IPR003591 -
Trre11g03851 957 SMART LRR_typ_2 402 425 IPR003591 -
Trre11g03851 957 SMART LRR_typ_2 117 140 IPR003591 -
Trre11g03851 957 SMART LRR_typ_2 194 217 IPR003591 -
Trre11g03851 957 SMART LRR_typ_2 426 448 IPR003591 -
Trre11g03851 957 SMART LRR_typ_2 94 116 IPR003591 -
Trre11g03851 957 SMART LRR_typ_2 141 164 IPR003591 -
Trre11g03851 957 FunFam Leucine-rich repeat receptor-like kinase 334 463 - -
Trre11g03851 957 Pfam Leucine rich repeat N-terminal domain 28 69 IPR013210 -
Trre11g03851 957 Pfam Leucine rich repeat N-terminal domain 335 375 IPR013210 -
Trre11g03851 957 Pfam Protein kinase domain 610 823 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g03851 957 ProSitePatterns Protein kinases ATP-binding region signature. 614 636 IPR017441 GO:0005524
Trre11g03851 957 SMART serkin_6 608 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g03851 957 Gene3D Ribonuclease Inhibitor 28 329 IPR032675 -
Trre11g03851 957 FunFam receptor protein kinase TMK1 570 685 - -
Trre11g03851 957 FunFam Receptor-like kinase TMK4 28 329 - -
Trre11g03851 957 ProSiteProfiles Protein kinase domain profile. 608 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g03851 957 SUPERFAMILY L domain-like 26 311 - -
Trre11g03851 957 MobiDBLite consensus disorder prediction 469 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03851 Trre-Chr11 51726640 51729822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03851 85 877 Receptor kinase-like Gene Family AT1G55610 30.409 3.25e-79 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trre11g03851 Pkinase 2.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03851 - - cam:101493565 1544.64