Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03842 ATGGTGTCTAAGATGGATCAATACGAGATCATGGAACAGATCGGTCGTGGTGCATTTGGTGCTGCAATTCTCGTTAATCACAAAGTGGAGAAGAAGAGATATGTGTTGAAGAAAATTAGGCTTGCGCGGCAAACGGAACGGTGTAGAAGATCTGCACATCAAGAGCATCCTTACATTGTTGAGTTCAAGGAAGCTTGGGTTGAGAAGGGTTGCTATGTCTGCATTGTTACTGGATACTGTGAAGGTGGAGACATGGCAGCATTGATCAAAAAATCAAATGGGGTTTACTTTCCTGAGGAGAAAATCTGCAAATGGGTTACTCAATTACTGTTGGCAATAGAATACCTGCATTCAAATTTTGTTTTACACCGTGACCTAAAGTGTTCTAACATCTTTCTTACAAAGGATCAGGATGTTCGCTTAGGGGATTTTGGACTTGCTAAGACACTAAAAGCTGATGATTTGACTTCTTCGGTTGTAGGAACTCCCAACTACATGTGTCCTGAACTGCTTACAGATATTCCTTATGGATTAAAATCTGATATTTGGTCACTAGGGTGTTGTATATATGAGATGGCTGCTCACCGCCCTGCTTTCAAAGCTTTTGATATGGATGGATTGATAAGCAAGATAAACCGCTCCGCTATTGGTGCTTTGCCTCCTTGTTACTCTCCATCATTGAAAACACTGATAAAAGGCATGCTGAGGAAAAACCCCGAGCATCGTCCATCAGCATCCGATATCTTAAAGCACCCTTGTTTGCAGACTTATGTTCATCAATATCGTTCATCACTCTGTCCTCCATCAGCCTCTTCTCCTGAAAAGCCAATTTCTGCTGTCCATTTTCCATGGAAAAATATGGCAGAAAGTGAAAACAGTAATAGTTGGGGTGGTGACAAAGGTAGTTTGATGTCAAATGAGAGAAATGCTGTAAAAGCAATACCAATGGGTGATAACAAAATCACTGAGGTAGACCTGGCATCAATTGACGATAATGGGTCTGACCTTCTCATGCCAGTTGGAAAAGGAATTAACTCCAGCAATGTCAATGCCAAAACAGATAAACAGGAGATTAGGAAGAAAACTCACATTGAGCACCCTTCTAATGTTGGATCTAAGCAAGGAAAAGCAGTTAAGAATGTAATGATAGCACCAAAACATGAAAAGGTTAGAGAGACAAGTGCTCCAATGAGAGGCAGTTTGATGAAGGTTGGTGGTATGTCTAAATTGCCAAAATCTGATTTTGGTGTTAGTGGATTGAAGCCTAATTTAGAGGTGCCGCCTATTGGACCTTCAAAAGCAACACTTAATTGTGTAAAACGAATCCAAGGATCAAATACTACAAAACATCAGTTACAGATGATAGAGTCTAAACCTCGGCATAAGGTGTCTCCTTCTTGTCCTATCAAACAAGTAGTAGCAGAAGCTTTAGTTCCTGCCAAGCCAAAACAAAAGACTCCTCCGGGCCTACTTAAACCACCCTCATTTCCGGGACGTATAATGGGCCATCATCAGTTGACTAGCGGTCATCTAGCACATGTTTCTAGAGAGCCTTCGAAGGCTTTTGAAAGTGGTACCAAAGGAATGCAAACAGACAACAGCAATTCTGTCTCATCTTCCGTCTCTATTCAAGGATTCGAATTTTATGACTCTGCAACCACTTTTATTGACTTGAGTGAACCAACACTCCCTGAACATGGGAGTTTTAATCACACTGAAAAGGTGGAATCACTTCCAGATAGCAGCGGACCTGATGAAATTTTTTCTGGTGAAACCTCTCCATTTACACCAAATTTTCAGAATACCATTACTAGTAATGAGAAATTAAGTCCTAGTTTAGCTCTGGATCACTCAGTTCAACATCCTAAGGTAATGTATGCTTCTGGTGACAGCTTTCTCGTAAATAAAACAACTACATCTGCTCCCTGTGAGTGTGATGTTCCCTCTTCCGAAGTGACACAAGAAATCAATGACCTTCAAGATATTTCTAAGGAAATGGCTTCAATTAAAACTTTCAGACCTTCATTCCCTATTTCTGGGGAAAATTCCGTTTGTGATGTTAGTCCAGTAAGCTTGCCAAATAGTATGCCTGGTAAAGTTAGCCAGTCGAAGTTTATGTGCATCTCGACCGGTGATGAGAAATTCATGGTGAGGGAAAGAGTCTCATCGGTGGCTGAAACTGCTCCTCTGAATATCTCTACTAAAATTTCCAGCCAGAAAGTTTTACAAGACGAGAAGAGAATGATTTTACAGAATCCAGCAACAGAAAGGCCAGCTTCTGGCCATCTTCCCCCAGCTTTTGATGATGTCATCCATGTTATACGCCATAGCAGTTATCGTATGGGAAGTGAACTTCCAGTAAAGGACTCAACTGAGATTGGAGTTACATGTTGA 2394 0.4106 MVSKMDQYEIMEQIGRGAFGAAILVNHKVEKKRYVLKKIRLARQTERCRRSAHQEHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAALIKKSNGVYFPEEKICKWVTQLLLAIEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLTSSVVGTPNYMCPELLTDIPYGLKSDIWSLGCCIYEMAAHRPAFKAFDMDGLISKINRSAIGALPPCYSPSLKTLIKGMLRKNPEHRPSASDILKHPCLQTYVHQYRSSLCPPSASSPEKPISAVHFPWKNMAESENSNSWGGDKGSLMSNERNAVKAIPMGDNKITEVDLASIDDNGSDLLMPVGKGINSSNVNAKTDKQEIRKKTHIEHPSNVGSKQGKAVKNVMIAPKHEKVRETSAPMRGSLMKVGGMSKLPKSDFGVSGLKPNLEVPPIGPSKATLNCVKRIQGSNTTKHQLQMIESKPRHKVSPSCPIKQVVAEALVPAKPKQKTPPGLLKPPSFPGRIMGHHQLTSGHLAHVSREPSKAFESGTKGMQTDNSNSVSSSVSIQGFEFYDSATTFIDLSEPTLPEHGSFNHTEKVESLPDSSGPDEIFSGETSPFTPNFQNTITSNEKLSPSLALDHSVQHPKVMYASGDSFLVNKTTTSAPCECDVPSSEVTQEINDLQDISKEMASIKTFRPSFPISGENSVCDVSPVSLPNSMPGKVSQSKFMCISTGDEKFMVRERVSSVAETAPLNISTKISSQKVLQDEKRMILQNPATERPASGHLPPAFDDVIHVIRHSSYRMGSELPVKDSTEIGVTC 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03842 797 SMART serkin_6 8 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g03842 797 Pfam Protein kinase domain 8 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g03842 797 SUPERFAMILY Protein kinase-like (PK-like) 5 296 IPR011009 -
Trre11g03842 797 ProSiteProfiles Protein kinase domain profile. 8 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g03842 797 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 608 - -
Trre11g03842 797 Gene3D Transferase(Phosphotransferase) domain 1 82 312 - -
Trre11g03842 797 MobiDBLite consensus disorder prediction 564 585 - -
Trre11g03842 797 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Trre11g03842 797 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Trre11g03842 797 CDD STKc_Nek 7 254 - -
Trre11g03842 797 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03842 Trre-Chr11 51658209 51663926 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03842 14 265 MAP Kinase Kinase Kinase AT1G53570 30.566 3.84e-31 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Trre11g03842 Pkinase 1.2e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03842 K08857 - gmx:100818943 1063.52