Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03840 ATGGTGTCTAAGATGGATCAATACGAGATCATGGAACAGATCGGTCGTGGTGCATTTGGTGCTGCAATTCTCGTTAATCACAAAGTGGAGAAGAAGAGATATGTGTTGAAGAAAATTAGGCTTGCGCGGCAAACGGAACGGTGTAGAAGATCTGCACATCAAGAGCATCCTTACATTGTTGAGTTCAAGGAAGCTTGGGTTGAGAAGGGTTGCTATGTCTGCATTGTTACTGGATACTGTGAAGGTGGAGACATGGCAGCATTGATCAAAAAATCAAATGGGGTTTACTTTCCTGAGGAGAAAATCTGCAAATGGGTTACTCAATTACTGTTGGCAATAGAATACCTGCATTCAAATTTTGTTTTACACCGTGACCTAAAGGATCAGGATGTTCGCTTAGGGGATTTTGGACTTGCTAAGACACTAAAAGCTGATGATTTGACTTCTTCGGTTGTAGGAACTCCCAACTACATGTGTCCTGAACTGCTTACAGATATTCCTTATGGATTAAAATCTGATATTTGGTCACTAGGGTGTTGTATATATGAGATGGCTGCTCACCGCCCTGCTTTCAAAGCTTTTGATATGGATGGATTGATAAGCAAGATAAACCGCTCCGCTATTGGTGCTTTGCCTCCTTGTTACTCTCCATCATTGAAAACACTGATAAAAGGCATGCTGAGGAAAAACCCCGAGCATCGTCCATCAGCATCCGATATCTTAAAGCACCCTTGTTTGCAGACTTATGTTCATCAATATCGTTCATCACTCTGTCCTCCATCAGCCTCTTCTCCTGAAAAGCCAATTTCTGCTGTCCATTTTCCATGGAAAAATATGGCAGAAAGTGAAAACAGTAATAGTTGGGGTGGTGACAAAGGTAGTTTGATGTCAAATGAGAGAAATGCTGTAAAAGCAATACCAATGGGTGATAACAAAATCACTGAGGTAGACCTGGCATCAATTGACGATAATGGGTCTGACCTTCTCATGCCAGTTGGAAAAGGAATTAACTCCAGCAATGTCAATGCCAAAACAGATAAACAGGAGATTAGGAAGAAAACTCACATTGAGCACCCTTCTAATGTTGGATCTAAGCAAGGAAAAGCAGTTAAGAATGTAATGATAGCACCAAAACATGAAAAGGTTAGAGAGACAAGTGCTCCAATGAGAGGCAGTTTGATGAAGGTTGGTGGTATGTCTAAATTGCCAAAATCTGATTTTGGTGTTAGTGGATTGAAGCCTAATTTAGAGGTGCCGCCTATTGGACCTTCAAAAGCAACACTTAATTGTGTAAAACGAATCCAAGGATCAAATACTACAAAACATCAGTTACAGATGATAGAGTCTAAACCTCGGCATAAGGTGTCTCCTTCTTGTCCTATCAAACAAGTAGTAGCAGAAGCTTTAGTTCCTGCCAAGCCAAAACAAAAGACTCCTCCGGGCCTACTTAAACCACCCTCATTTCCGGGACGTATAATGGGCCATCATCAGTTGACTAGCGGTCATCTAGCACATGTTTCTAGAGAGCCTTCGAAGGCTTTTGAAAGTGGTACCAAAGGAATGCAAACAGACAACAGCAATTCTGTCTCATCTTCCGTCTCTATTCAAGGATTCGAATTTTATGACTCTGCAACCACTTTTATTGACTTGAGTGAACCAACACTCCCTGAACATGGGAGTTTTAATCACACTGAAAAGGTGGAATCACTTCCAGATAGCAGCGGACCTGATGAAATTTTTTCTGGTGAAACCTCTCCATTTACACCAAATTTTCAGAATACCATTACTAGTAATGAGAAATTAAGTCCTAGTTTAGCTCTGGATCACTCAGTTCAACATCCTAAGGTAATGTATGCTTCTGGTGACAGCTTTCTCGTAAATAAAACAACTACATCTGCTCCCTGTGAGTGTGATGTTCCCTCTTCCGAAGTGACACAAGAAATCAATGACCTTCAAGATATTTCTAAGGAAATGGCTTCAATTAAAACTTTCAGACCTTCATTCCCTATTTCTGGGGAAAATTCCGTTTGTGATGTTAGTCCAGTAAGCTTGCCAAATAGTATGCCTGGTAAAGTTAGCCAGTCGAAGTTTATGTGCATCTCGACCGGTGATGAGAAATTCATGGTGAGGGAAAGAGTCTCATCGGTGGCTGAAACTGCTCCTCTGAATATCTCTACTAAAATTTCCAGCCAGAAAGTTTTACAAGACGAGAAGAGAATGATTTTACAGAATCCAGCAACAGAAAGGCCAGCTTCTGGCCATCTTCCCCCAGCTTTTGATGATGTCATCCATGTTATACGCCATAGCAGTTATCGTATGGGAAGTGAACTTCCAGTAAAGGACTCAACTGAGATTGGAGTTACATGTTGA 2370 0.4118 MVSKMDQYEIMEQIGRGAFGAAILVNHKVEKKRYVLKKIRLARQTERCRRSAHQEHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAALIKKSNGVYFPEEKICKWVTQLLLAIEYLHSNFVLHRDLKDQDVRLGDFGLAKTLKADDLTSSVVGTPNYMCPELLTDIPYGLKSDIWSLGCCIYEMAAHRPAFKAFDMDGLISKINRSAIGALPPCYSPSLKTLIKGMLRKNPEHRPSASDILKHPCLQTYVHQYRSSLCPPSASSPEKPISAVHFPWKNMAESENSNSWGGDKGSLMSNERNAVKAIPMGDNKITEVDLASIDDNGSDLLMPVGKGINSSNVNAKTDKQEIRKKTHIEHPSNVGSKQGKAVKNVMIAPKHEKVRETSAPMRGSLMKVGGMSKLPKSDFGVSGLKPNLEVPPIGPSKATLNCVKRIQGSNTTKHQLQMIESKPRHKVSPSCPIKQVVAEALVPAKPKQKTPPGLLKPPSFPGRIMGHHQLTSGHLAHVSREPSKAFESGTKGMQTDNSNSVSSSVSIQGFEFYDSATTFIDLSEPTLPEHGSFNHTEKVESLPDSSGPDEIFSGETSPFTPNFQNTITSNEKLSPSLALDHSVQHPKVMYASGDSFLVNKTTTSAPCECDVPSSEVTQEINDLQDISKEMASIKTFRPSFPISGENSVCDVSPVSLPNSMPGKVSQSKFMCISTGDEKFMVRERVSSVAETAPLNISTKISSQKVLQDEKRMILQNPATERPASGHLPPAFDDVIHVIRHSSYRMGSELPVKDSTEIGVTC 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03840 789 MobiDBLite consensus disorder prediction 556 577 - -
Trre11g03840 789 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 600 - -
Trre11g03840 789 Gene3D Transferase(Phosphotransferase) domain 1 82 304 - -
Trre11g03840 789 SUPERFAMILY Protein kinase-like (PK-like) 4 285 IPR011009 -
Trre11g03840 789 CDD STKc_Nek 7 246 - -
Trre11g03840 789 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Trre11g03840 789 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Trre11g03840 789 Pfam Protein kinase domain 8 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g03840 789 ProSiteProfiles Protein kinase domain profile. 8 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03840 Trre-Chr11 51658209 51663926 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03840 14 257 MAP Kinase Kinase Kinase AT1G53570 29.811 1.17e-27 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Trre11g03840 Pkinase 5.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03840 K08857 - gmx:100818943 1039.64