Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03827 ATGGAAATGGTTTCTAAGGAAGCTCAGATGTCTATTGCTGCTTCTTCTATGTTTCCTGGTTTCAGATTTTGTCCCACTGATGAAGAGTTGATTTCTTATTACCTTAGAAAAAAATTAGATGGTCATGAAGAAAGTGTTCAGGTTATTTCTGAAGTTGAACTTTGTAAATATGAACCTTGGGATTTACCAGCCAAATCATTCATTCAATCAGATAACGAATGGTTCTTCTTCTCGCCCCGTGGAAGAAAGTATCCAAACGGTTCACAAAGTAAAAGAGCTACTGATTGTGGCTATTGGAAAGCAACTGGAAAAGAGCGCAATGTGAAATCAGGTTCTAACGTCATAGGTACGAAACGGACTTTGGTGTTTCACTTAGGTCGTGCACCTAAAGGCGAAAGGACAGAATGGATTATGCACGAGTACTGCGTCAGTGATAGGTCTCCGGATTCTTTGGTAGTTTGTCGCCTCAAGAGGAACACAGAGTTTCGTGTGAACGATGCTTCCAATAGAGCCTCTTCAAGCCAAGTTAACCCGGTGCATTCACATGAAAGTGAATGTGCTGTCTCAGAAGGTGGTATTGATGTTCAAAGACGCATTTGTGATCATGAACAAGAAAAGGAGATTGATGGTAGTTCCAAGCGTGGCAGCAGCAGTTACGGTTCACCTTCAATGGAACAAATTGATTCTGTGTCTGAATCAAATCAACGACCAGCTAATGACGCTACTTTGACAGACTCTTCCGGCCACCTAAAGATGGATGAAGAGGATTGTTATGCTGAGATACTAAAGAATGATATCATAAAATTAGACGAATCATCAATGTCTCGAGGGGCTCAAACAAGACCACATGACCTTGCACATTCTCATCCCTGCCAAGGCACTGCACAGAGGAGAATACGATTAAGGGTTGCGAAATCAACACATTCTCAATCAGGAGTTCGTTTCTCAAGAACTATGCACCAATCAAAGAGTAGCTTCTTTGCTAGAATGACCAACCGTTTGATGATATTTGCTTTCTTTGTTTTCACTCTCATGGCTATATTTTTTTGGTCTTTATTGGGTGGTCACAAACAACTGAGAAATATTGTGGGAAAGTTTCGGGCGTAA 1107 0.411 MEMVSKEAQMSIAASSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVELCKYEPWDLPAKSFIQSDNEWFFFSPRGRKYPNGSQSKRATDCGYWKATGKERNVKSGSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCVSDRSPDSLVVCRLKRNTEFRVNDASNRASSSQVNPVHSHESECAVSEGGIDVQRRICDHEQEKEIDGSSKRGSSSYGSPSMEQIDSVSESNQRPANDATLTDSSGHLKMDEEDCYAEILKNDIIKLDESSMSRGAQTRPHDLAHSHPCQGTAQRRIRLRVAKSTHSQSGVRFSRTMHQSKSSFFARMTNRLMIFAFFVFTLMAIFFWSLLGGHKQLRNIVGKFRA 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03827 368 ProSiteProfiles NAC domain profile. 17 159 IPR003441 GO:0003677|GO:0006355
Trre11g03827 368 MobiDBLite consensus disorder prediction 166 182 - -
Trre11g03827 368 MobiDBLite consensus disorder prediction 213 246 - -
Trre11g03827 368 MobiDBLite consensus disorder prediction 203 249 - -
Trre11g03827 368 MobiDBLite consensus disorder prediction 166 188 - -
Trre11g03827 368 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
Trre11g03827 368 Gene3D NAC domain 26 164 IPR036093 GO:0003677|GO:0006355
Trre11g03827 368 Pfam No apical meristem (NAM) protein 19 142 IPR003441 GO:0003677|GO:0006355
Trre11g03827 368 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03827 Trre-Chr11 51540158 51543156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03827 4 353 NAC Transcription Factor Family AT2G27300 44.142 1.17e-94 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre11g03827 NAM 7.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03827 - - tpra:123896537 718.768