Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03814 ATGGAGGATCTACCACCTGGTTTTCGTTTCTACCCAACAGAAGAAGAGCTAGTTGGATTCTATCTACACAATCAGCTACAAGGACAAATGCATCATCACATAAACAGAGTTATCCCTATCATTGATATTAATGGCAAAGAGCCATGGGATCTTCCAACATTTGCAGGGGAGAAATGTCATGGAGAGACAGAACAATGGTTTTTCTTTTCAGCAAGACAAGAGAGAGAGTTGAGAGGAGGAAGACCAAATAGAACAACATCTTGTGGATATTGGAAGGCCACAGGTTCACCAAGCTACGTTTACTCTTCTAAAAACAAAGTGATTGGGATAAAGAAAACTATGGTGTTTTACAAAGGGAAAGCTCCTTTTGGAAGGAAAACCAAATGGAAAATGCATGAATACAAAGCTATTGAACAACACTCTCACCCTTATAAGTTGCGACACGAATTCAGCTTGTGTCGCATTTATGTGATATCAGGAAGCTTTGGTTCATTTGATCGAAGACCGTTAGAAATGCCAAAAGTGGAGTTACAACTTGATCATATTGCTTCAACGTCTCAACAAGTGGTAGCAGAGCTCGATGGATCAAGCTTGTGTGCAACTACCCACTCAGGAGGGGTAGGAAGAGACCATGACGATGCTCTTATTGGAGGGTCAAGTGGAACAAATTGGAATAGTGTAGCAAATAATGAGGTTGATGAACCTGAAGTACCTCTTTGGGAATGGGACCAACTACATTGGATTTAA 747 0.4083 MEDLPPGFRFYPTEEELVGFYLHNQLQGQMHHHINRVIPIIDINGKEPWDLPTFAGEKCHGETEQWFFFSARQERELRGGRPNRTTSCGYWKATGSPSYVYSSKNKVIGIKKTMVFYKGKAPFGRKTKWKMHEYKAIEQHSHPYKLRHEFSLCRIYVISGSFGSFDRRPLEMPKVELQLDHIASTSQQVVAELDGSSLCATTHSGGVGRDHDDALIGGSSGTNWNSVANNEVDEPEVPLWEWDQLHWI 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03814 248 Pfam No apical meristem (NAM) protein 5 135 IPR003441 GO:0003677|GO:0006355
Trre11g03814 248 Gene3D NAC domain 13 161 IPR036093 GO:0003677|GO:0006355
Trre11g03814 248 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
Trre11g03814 248 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 171 - -
Trre11g03814 248 ProSiteProfiles NAC domain profile. 4 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03814 Trre-Chr11 51432485 51434552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03814 2 247 NAC Transcription Factor Family AT3G44350 51.200 8.77e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre11g03814 NAM 2.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03814 - - gmx:100784960 348.977