Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03805 ATGGCACCGAAGAAGGATAAGGCTCCACCACCGTCGTCGAAGCCGGCGAAATCAGGAGGAGGAAAACAGAAGAAGAAGAAATGGAGCAAAGGAAAACAAAAGGAAAAGGTTAACAACATGGTGTTGTTTGATCAAGGTACCTATGATAAGCTTCTCACTGAAGCTCCTAAGTACAAACTCATCACTCCTTCAGTTCTCTCTGATCGTCTCAGGATTAATGGATCTTTGGCACGTCGTGCAATCAAGGACCTAATGGCAAGAGGTTTGATTAGGTTGGTATCTGCTCATGCTAGCCAACAGATTTACACTAGAGCTACCAATACATAA 327 0.4373 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKYKLITPSVLSDRLRINGSLARRAIKDLMARGLIRLVSAHASQQIYTRATNT 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03805 108 MobiDBLite consensus disorder prediction 1 36 - -
Trre11g03805 108 Gene3D - 21 108 - -
Trre11g03805 108 PANTHER 40S RIBOSOMAL PROTEIN S25 1 108 IPR004977 -
Trre11g03805 108 FunFam 40S ribosomal protein S25 21 108 - -
Trre11g03805 108 Pfam S25 ribosomal protein 7 105 IPR004977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03805 Trre-Chr11 51349226 51349782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03805 1 108 Cytoplasmic Ribosomal Protein Gene Family AT2G21580 87.963 3.71e-55 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03805 K02975 - mof:131149219 158.303