Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03796 ATGAAAATTTGCATGCTTGGTGATGCCCAGCATGTTGAGGAGGCAGAGAAAATAGGATTGGAATCGATGGATGTTGAAGCTTTGAAGAAGCTAAACAAAAATAAGAAACTGGTAAAGAAATTGGCAAAGAAGTACCATGCCTTTTTAGCTTCTGAAGCTGTTATCAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGAAAGTTCCCTACACTTGTTTCCCACCAAGAATCTCTTGAGGCTAAGGTTAATGAGACCAAGGCTATGGTCAAATTTCAGCTTAAGAAAGTGTTGTGCATGGGAGTAGCTGTTGGCAATGTCAGTATGGATGAAAAACAAATCTTCCAAAACGTGCAACTCAGTGTTAACTTCCTCGTGTCCTTGTTGAAAAAGAACTGGCAAAATGTTAGGTGCTTGTATCTGAAGAGTTCGATGGGCAAATCACACCGTGTCTTTTAA 468 0.4103 MKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSSMGKSHRVF 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03796 155 FunFam Ribosomal protein 4 93 - -
Trre11g03796 155 CDD Ribosomal_L1 1 154 IPR028364 -
Trre11g03796 155 Gene3D - 1 93 IPR016095 -
Trre11g03796 155 SUPERFAMILY Ribosomal protein L1 1 155 IPR023674 -
Trre11g03796 155 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 14 149 - -
Trre11g03796 155 Pfam Ribosomal protein L1p/L10e family 1 149 IPR028364 -
Trre11g03796 155 ProSitePatterns Ribosomal protein L1 signature. 55 74 IPR023673 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03796 Trre-Chr11 51287117 51288415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03796 1 155 Cytoplasmic Ribosomal Protein Gene Family AT5G22440 92.903 5.57e-90 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03796 K02865 - gmx:100527698 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03796 11 51287117 51288415 Trre11g03796 11 51287117 51288415 ECH