Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03794 ATGTATCATCATCACCAACAACATCAAGGAAAAAATATCCATTCTTCTTCTAGAATGTCAATACCATCTGAGAGACACATGTTCCTTCAAACAGGAAATGGTTCTAGTGATTCGGGACTCGTACTCTCAACCGATGCTAAACCTCGATTAAAATGGACACCTGATCTTCATGCAAGGTTTATAGAAGCAGTTAATCAGTTAGGTGGAGCTGACAAGGCTACTCCAAAAACAGTAATGAAACTCATGGGGATTACAGGGCTTACCTTATATCATCTAAAGAGTCATCTTCAGAAGTACAGATTGAGCAAGAATCTGCATGGACAAAGCAACAGTAATGTGACACACAAATTAAACACACATTCAGCTTCAGTAACTGATGAGAGACTTTCTGATCAAACCAATGGAACTCACATCAATAAATTAACCCTTGGACCACAACCTAATACTAATAATAACAAAGATATACACATAAGCGAGGCGCTGCAGATGCAGATTGAGGTTCAAAGAAGACTCAATGAACAACTTGAGGTACAAAGACACTTGCAACTAAGGATAGAGGCTCAAGGAAAATACCTTCAATCGGTACTCGAAAAAGCTCAAGAAACACTTGGTAGACAAAATTTAGGAATAGTAGGACTTGAAGCTGCCAAAGTTCAACTCTCAGAGCTAGTTTCAAAAGTATCCTCACAGTGTCTGAATTCAACATTTTCAGAGATGAAAGAGTTACAAGGATTTTGTCCTCAACCAAACGACGGCTCGATGGATAGTAGTTGTTTAACATCGTGCGACCGATCATTAAAAGAACAAGAGATTATTCAAAATGGAGGAGGGTTTGGATTAAGACACTTCAACAACAATAATCATGTGTTCATGGAAAGAAAAGATTCACAACAAACAACAGAATTAACAGGTTCTGTTCAAAACCTTAGAAACAATGAAGTACTAAAATGGTGTGTTGATGAAGTAAAAAAAAACAGTACTAATTTTCTCACCCCTTTAGGAAAAAATAATGAATTAGAAAGAAATCATGGAAATTTGTCTATGAAGATTGGAGTTGAACAAAGAACAGAAGCAATGAAATCAGTGGATGATAGTAATAAGATGCAACAATCTTCTAATTACTTTTCAGCTTCAAGATTGGATTTAAACAGTGGTGGAGATCATAATGAAGGTGCTACAAATTGTAAACAACTTGATTTGAATAGGTTCAGTTGGAACTGA 1221 0.3628 MYHHHQQHQGKNIHSSSRMSIPSERHMFLQTGNGSSDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGITGLTLYHLKSHLQKYRLSKNLHGQSNSNVTHKLNTHSASVTDERLSDQTNGTHINKLTLGPQPNTNNNKDIHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIVGLEAAKVQLSELVSKVSSQCLNSTFSEMKELQGFCPQPNDGSMDSSCLTSCDRSLKEQEIIQNGGGFGLRHFNNNNHVFMERKDSQQTTELTGSVQNLRNNEVLKWCVDEVKKNSTNFLTPLGKNNELERNHGNLSMKIGVEQRTEAMKSVDDSNKMQQSSNYFSASRLDLNSGGDHNEGATNCKQLDLNRFSWN 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03794 406 Gene3D - 46 104 - -
Trre11g03794 406 Coils Coil 158 178 - -
Trre11g03794 406 Pfam Myb-like DNA-binding domain 49 100 IPR001005 -
Trre11g03794 406 SUPERFAMILY Homeodomain-like 46 102 IPR009057 -
Trre11g03794 406 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 352 IPR044848 GO:0003700
Trre11g03794 406 FunFam Myb family transcription factor 46 104 - -
Trre11g03794 406 NCBIfam myb-like DNA-binding domain, SHAQKYF class 47 102 IPR006447 GO:0003677
Trre11g03794 406 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 104 IPR017930 -
Trre11g03794 406 Pfam MYB-CC type transfactor, LHEQLE motif 155 202 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03794 Trre-Chr11 51268579 51270479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03794 79 406 G2-like Transcription Factor Family AT3G04030 48.094 2.63e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre11g03794 Myb_DNA-binding 3.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03794 - - gmx:100810396 526.939